miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 122403 0.97 0.029422
Target:  5'- uCGUaCUCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAaGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122344 0.89 0.091632
Target:  5'- uCGUaCUCGAAAAGCaAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122307 0.85 0.160444
Target:  5'- uCGUaCUUGAAAAGCaAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122239 0.68 0.897223
Target:  5'- ---aCUUGAAAAGCGGGGUCaaUGCUg -3'
miRNA:   3'- gcaaGAGCUUUUCGCUCCAGccGCGA- -5'
21235 3' -53.2 NC_004778.3 + 117172 0.71 0.792081
Target:  5'- uGUUCguggUCGugccgguGGCGGGGUCGGUGUa -3'
miRNA:   3'- gCAAG----AGCuuu----UCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 114070 0.67 0.937818
Target:  5'- uCGcUCUCcgcGAGCGAGGaacccgCGGCGCc -3'
miRNA:   3'- -GCaAGAGcuuUUCGCUCCa-----GCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 113919 0.66 0.959369
Target:  5'- gGUUCcucgcucgCGGAGAGCGAGcG-CGGCGg- -3'
miRNA:   3'- gCAAGa-------GCUUUUCGCUC-CaGCCGCga -5'
21235 3' -53.2 NC_004778.3 + 99913 0.74 0.61992
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99847 0.73 0.651371
Target:  5'- aCGUUCUCaAAAGGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99716 0.73 0.651371
Target:  5'- aCGUUCUCaAAAGGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99650 0.87 0.123224
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99584 0.87 0.123224
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99479 0.89 0.091632
Target:  5'- uCGUaCUCGAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99437 0.72 0.742846
Target:  5'- gCGUUCUCGAAAAGCGAGcgcuaucuuauacGUgCGucaGCGCg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUC-------------CA-GC---CGCGa -5'
21235 3' -53.2 NC_004778.3 + 99413 0.98 0.024164
Target:  5'- uCGUaCUCGGAAAGCGAGGUCGGCGCUc -3'
miRNA:   3'- -GCAaGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99355 0.88 0.113722
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99245 0.71 0.782697
Target:  5'- uCGUaUUUGuAAAGCGAGGUC-GCGCUg -3'
miRNA:   3'- -GCAaGAGCuUUUCGCUCCAGcCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66976 0.92 0.064191
Target:  5'- aCGUUCUUaAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGcUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66913 1.02 0.01298
Target:  5'- aCGUUCUCGAAAAGUGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66850 0.72 0.712566
Target:  5'- uGUaCcCGAAAAGCGAGGcuaucuuuaggcgUCGGCGCc -3'
miRNA:   3'- gCAaGaGCUUUUCGCUCC-------------AGCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.