miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 122715 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66585 1 0.017718
Target:  5'- uCGUaCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 19841 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 117172 0.71 0.792081
Target:  5'- uGUUCguggUCGugccgguGGCGGGGUCGGUGUa -3'
miRNA:   3'- gCAAG----AGCuuu----UCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122653 0.99 0.02284
Target:  5'- cCGUUCcCGAAAAGCGAGGUCGGCGCUu -3'
miRNA:   3'- -GCAAGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 20128 0.92 0.062444
Target:  5'- aCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66913 1.02 0.01298
Target:  5'- aCGUUCUCGAAAAGUGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 19972 1.09 0.00454
Target:  5'- aCGUUCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 125222 0.69 0.876152
Target:  5'- uCGUaCUUGAAAAuCGGGGUCaGCGCc -3'
miRNA:   3'- -GCAaGAGCUUUUcGCUCCAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122239 0.68 0.897223
Target:  5'- ---aCUUGAAAAGCGGGGUCaaUGCUg -3'
miRNA:   3'- gcaaGAGCUUUUCGCUCCAGccGCGA- -5'
21235 3' -53.2 NC_004778.3 + 124985 0.82 0.239368
Target:  5'- uCGuUUUUCGGAacgucuguacuuaaAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GC-AAGAGCUU--------------UUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122307 0.85 0.160444
Target:  5'- uCGUaCUUGAAAAGCaAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99437 0.72 0.742846
Target:  5'- gCGUUCUCGAAAAGCGAGcgcuaucuuauacGUgCGucaGCGCg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUC-------------CA-GC---CGCGa -5'
21235 3' -53.2 NC_004778.3 + 122889 0.89 0.09674
Target:  5'- uGUaCUUGGAAAGCGGGGUCGGCGCc -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99245 0.71 0.782697
Target:  5'- uCGUaUUUGuAAAGCGAGGUC-GCGCUg -3'
miRNA:   3'- -GCAaGAGCuUUUCGCUCCAGcCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122638 0.71 0.750777
Target:  5'- -uUUCUCGAAAAGCGAGugcuauaaacgugcGUCaGCGCc -3'
miRNA:   3'- gcAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 60949 0.72 0.723758
Target:  5'- ---aCUCuu-GAGCGuGGUCGGCGCa -3'
miRNA:   3'- gcaaGAGcuuUUCGCuCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66850 0.72 0.712566
Target:  5'- uGUaCcCGAAAAGCGAGGcuaucuuuaggcgUCGGCGCc -3'
miRNA:   3'- gCAaGaGCUUUUCGCUCC-------------AGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 24263 0.84 0.182639
Target:  5'- cCGUaCUCGaAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGC-UUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23934 0.84 0.202309
Target:  5'- cCGUaCUCGAAAcGCGAGG-CGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCaGCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.