miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 99716 0.73 0.651371
Target:  5'- aCGUUCUCaAAAGGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99913 0.74 0.61992
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122827 0.75 0.54723
Target:  5'- uGUaCUUGGAAAGCGGGaUCGGCGUUg -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCcAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 48920 0.76 0.516847
Target:  5'- ---aCUCGAAca-CGAGGUCGGCGCa -3'
miRNA:   3'- gcaaGAGCUUuucGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122589 0.78 0.427655
Target:  5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122527 0.78 0.427655
Target:  5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66457 0.79 0.356245
Target:  5'- gCGUUCUCGAAAAGCGAgugcuaucuuuagacGugcGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCU---------------C---CAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122771 0.81 0.272565
Target:  5'- uGUaCUCGAAAAGUGGaGUCGGCGCUg -3'
miRNA:   3'- gCAaGAGCUUUUCGCUcCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122971 0.82 0.247185
Target:  5'- uCGUaCcCGAAAAGCGGGGUUGGCGCc -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 124985 0.82 0.239368
Target:  5'- uCGuUUUUCGGAacgucuguacuuaaAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GC-AAGAGCUU--------------UUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 125029 0.83 0.218246
Target:  5'- uGUgUUCGGAAAGCGGGGUCGGCGa- -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCCAGCCGCga -5'
21235 3' -53.2 NC_004778.3 + 124963 0.83 0.218246
Target:  5'- aCGUUCUCcAAAAGCGGGGUCGG-GCg -3'
miRNA:   3'- -GCAAGAGcUUUUCGCUCCAGCCgCGa -5'
21235 3' -53.2 NC_004778.3 + 23934 0.84 0.202309
Target:  5'- cCGUaCUCGAAAcGCGAGG-CGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCaGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23995 0.84 0.182639
Target:  5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23798 0.84 0.182639
Target:  5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24263 0.84 0.182639
Target:  5'- cCGUaCUCGaAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGC-UUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24193 0.84 0.182639
Target:  5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 125090 0.85 0.169015
Target:  5'- uGUaCUC-AAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- gCAaGAGcUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122307 0.85 0.160444
Target:  5'- uCGUaCUUGAAAAGCaAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99650 0.87 0.123224
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.