miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 5' -44.4 NC_004778.3 + 66429 0.66 0.999996
Target:  5'- -------cAGCGCcgaccUCGCUUUUCGAGu -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 39193 0.66 0.999995
Target:  5'- gCUGAAGAUGGCACgcacgcgcaaauUUGCUUgUCGc-- -3'
miRNA:   3'- -GAUUUCUAUCGUG------------AGCGAAaAGCucu -5'
21235 5' -44.4 NC_004778.3 + 125053 0.66 0.999993
Target:  5'- -------aGGUACUCGUUUUUCGAa- -3'
miRNA:   3'- gauuucuaUCGUGAGCGAAAAGCUcu -5'
21235 5' -44.4 NC_004778.3 + 124931 0.66 0.999993
Target:  5'- -------aGGUACUCGUUUUUCGAa- -3'
miRNA:   3'- gauuucuaUCGUGAGCGAAAAGCUcu -5'
21235 5' -44.4 NC_004778.3 + 95197 0.66 0.999989
Target:  5'- ----cGAUAGUACUCGUUgaggcCGGGGu -3'
miRNA:   3'- gauuuCUAUCGUGAGCGAaaa--GCUCU- -5'
21235 5' -44.4 NC_004778.3 + 80017 0.68 0.999902
Target:  5'- -aAAAGu--GCACUUGUUUUaCGAGAa -3'
miRNA:   3'- gaUUUCuauCGUGAGCGAAAaGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 47949 0.69 0.999637
Target:  5'- gCUAAGGGcAGCGC-CGCUUugUUCGAa- -3'
miRNA:   3'- -GAUUUCUaUCGUGaGCGAA--AAGCUcu -5'
21235 5' -44.4 NC_004778.3 + 23968 0.69 0.999539
Target:  5'- uCUAAAaAUAGCACUCGUUUUaCGGc- -3'
miRNA:   3'- -GAUUUcUAUCGUGAGCGAAAaGCUcu -5'
21235 5' -44.4 NC_004778.3 + 20038 0.69 0.999539
Target:  5'- -------cGGCGCcgaccUCGCUUUUCGGGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 24365 0.69 0.999539
Target:  5'- uCUAAAaAUAGCACUCGUUUUaCGGc- -3'
miRNA:   3'- -GAUUUcUAUCGUGAGCGAAAaGCUcu -5'
21235 5' -44.4 NC_004778.3 + 122490 0.69 0.999539
Target:  5'- ----cGAUugaaaAGCGCcgaccUCGCUUUUCGGGAa -3'
miRNA:   3'- gauuuCUA-----UCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 24166 0.69 0.999539
Target:  5'- uCUAAAaAUAGCACUCGUUUUaCGGc- -3'
miRNA:   3'- -GAUUUcUAUCGUGAGCGAAAaGCUcu -5'
21235 5' -44.4 NC_004778.3 + 66626 0.71 0.997056
Target:  5'- -------cAGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 19917 0.71 0.997056
Target:  5'- -------cGGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 19817 0.71 0.997056
Target:  5'- -------cAGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 34468 0.71 0.997056
Target:  5'- -cGAGGAgcGCAC-CGCgg-UCGAGAa -3'
miRNA:   3'- gaUUUCUauCGUGaGCGaaaAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 66692 0.71 0.997056
Target:  5'- -------cGGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 99448 0.72 0.995835
Target:  5'- uCUAAAaAUAGCACaUGCUUUUCGAc- -3'
miRNA:   3'- -GAUUUcUAUCGUGaGCGAAAAGCUcu -5'
21235 5' -44.4 NC_004778.3 + 24107 0.73 0.992155
Target:  5'- ------uUGGCAUUCGCUUUaCGAGAa -3'
miRNA:   3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 24306 0.73 0.992155
Target:  5'- ------uUGGCAUUCGCUUUaCGAGAa -3'
miRNA:   3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.