miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 5' -44.4 NC_004778.3 + 66429 0.66 0.999996
Target:  5'- -------cAGCGCcgaccUCGCUUUUCGAGu -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 66616 1.11 0.025158
Target:  5'- uCUAAAGAUAGCACUCGCUUUUCGAGAa -3'
miRNA:   3'- -GAUUUCUAUCGUGAGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 66626 0.71 0.997056
Target:  5'- -------cAGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 66681 0.93 0.263704
Target:  5'- uCUAAAGAUAGCACUCGCUUUUCa--- -3'
miRNA:   3'- -GAUUUCUAUCGUGAGCGAAAAGcucu -5'
21235 5' -44.4 NC_004778.3 + 66692 0.71 0.997056
Target:  5'- -------cGGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 66746 1.11 0.027551
Target:  5'- uCUAAAGAUAGCACUCGCUUUUCGAGAc -3'
miRNA:   3'- -GAUUUCUAUCGUGAGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 66810 0.98 0.144294
Target:  5'- -cAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gaUUUCUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 66876 0.98 0.144294
Target:  5'- -cAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gaUUUCUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 66941 0.81 0.768816
Target:  5'- --uAAGAUAGCACUCGUUUUUCGcguacAGAc -3'
miRNA:   3'- gauUUCUAUCGUGAGCGAAAAGC-----UCU- -5'
21235 5' -44.4 NC_004778.3 + 67007 1.04 0.065775
Target:  5'- cCUAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GAUUUCUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 80017 0.68 0.999902
Target:  5'- -aAAAGu--GCACUUGUUUUaCGAGAa -3'
miRNA:   3'- gaUUUCuauCGUGAGCGAAAaGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 80813 0.73 0.98953
Target:  5'- uUAAAGAgUGGCACaCGCUgUUCGAGu -3'
miRNA:   3'- gAUUUCU-AUCGUGaGCGAaAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 95197 0.66 0.999989
Target:  5'- ----cGAUAGUACUCGUUgaggcCGGGGu -3'
miRNA:   3'- gauuuCUAUCGUGAGCGAaaa--GCUCU- -5'
21235 5' -44.4 NC_004778.3 + 99281 1.01 0.096427
Target:  5'- --uAAGAUAGCGCUCGCUUUUCGAGAa -3'
miRNA:   3'- gauUUCUAUCGUGAGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 99323 0.77 0.938586
Target:  5'- --cGGGGUuaaauGUACUCGUUUUUCGAGAa -3'
miRNA:   3'- gauUUCUAu----CGUGAGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 99448 0.72 0.995835
Target:  5'- uCUAAAaAUAGCACaUGCUUUUCGAc- -3'
miRNA:   3'- -GAUUUcUAUCGUGaGCGAAAAGCUcu -5'
21235 5' -44.4 NC_004778.3 + 99619 0.75 0.974721
Target:  5'- uCUAAAaAUAaCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GAUUUcUAUcGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 99686 0.87 0.503971
Target:  5'- uUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gAUUUcUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 99752 0.87 0.503971
Target:  5'- uUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gAUUUcUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 99817 0.87 0.503971
Target:  5'- uUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gAUUUcUAUCGUGAGCGAAAAGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.