miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 5' -44.4 NC_004778.3 + 66692 0.71 0.997056
Target:  5'- -------cGGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 23910 0.73 0.992155
Target:  5'- ------uUGGCAUUCGCUUUaCGAGAa -3'
miRNA:   3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 24107 0.73 0.992155
Target:  5'- ------uUGGCAUUCGCUUUaCGAGAa -3'
miRNA:   3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 24306 0.73 0.992155
Target:  5'- ------uUGGCAUUCGCUUUaCGAGAa -3'
miRNA:   3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 99448 0.72 0.995835
Target:  5'- uCUAAAaAUAGCACaUGCUUUUCGAc- -3'
miRNA:   3'- -GAUUUcUAUCGUGaGCGAAAAGCUcu -5'
21235 5' -44.4 NC_004778.3 + 34468 0.71 0.997056
Target:  5'- -cGAGGAgcGCAC-CGCgg-UCGAGAa -3'
miRNA:   3'- gaUUUCUauCGUGaGCGaaaAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 19817 0.71 0.997056
Target:  5'- -------cAGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 19917 0.71 0.997056
Target:  5'- -------cGGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 66626 0.71 0.997056
Target:  5'- -------cAGCGCcgaccUCGCUUUUCGAGAa -3'
miRNA:   3'- gauuucuaUCGUG-----AGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 122239 0.73 0.990917
Target:  5'- uCUuuAGAcGGCGCcgaccUCGCUUUUCGAGu -3'
miRNA:   3'- -GAuuUCUaUCGUG-----AGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 24239 0.74 0.98227
Target:  5'- ------uUAGUACUCGCUUUaCGAGAa -3'
miRNA:   3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 24041 0.74 0.98227
Target:  5'- ------uUAGUACUCGCUUUaCGAGAa -3'
miRNA:   3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 99948 0.9 0.384369
Target:  5'- uCUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GAUUUcUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 99686 0.87 0.503971
Target:  5'- uUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gAUUUcUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 99752 0.87 0.503971
Target:  5'- uUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gAUUUcUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 99817 0.87 0.503971
Target:  5'- uUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gAUUUcUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 99883 0.87 0.503971
Target:  5'- uUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gAUUUcUAUCGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 99323 0.77 0.938586
Target:  5'- --cGGGGUuaaauGUACUCGUUUUUCGAGAa -3'
miRNA:   3'- gauUUCUAu----CGUGAGCGAAAAGCUCU- -5'
21235 5' -44.4 NC_004778.3 + 99619 0.75 0.974721
Target:  5'- uCUAAAaAUAaCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GAUUUcUAUcGUGAGCGAAAAGCUCu -5'
21235 5' -44.4 NC_004778.3 + 23844 0.74 0.98227
Target:  5'- ------uUAGUACUCGCUUUaCGAGAa -3'
miRNA:   3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.