Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21235 | 5' | -44.4 | NC_004778.3 | + | 99817 | 0.87 | 0.503971 |
Target: 5'- uUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- gAUUUcUAUCGUGAGCGAAAAGCUCu -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 99883 | 0.87 | 0.503971 |
Target: 5'- uUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- gAUUUcUAUCGUGAGCGAAAAGCUCu -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 99323 | 0.77 | 0.938586 |
Target: 5'- --cGGGGUuaaauGUACUCGUUUUUCGAGAa -3' miRNA: 3'- gauUUCUAu----CGUGAGCGAAAAGCUCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 99619 | 0.75 | 0.974721 |
Target: 5'- uCUAAAaAUAaCACUCGCUUUUCGGGu -3' miRNA: 3'- -GAUUUcUAUcGUGAGCGAAAAGCUCu -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 23910 | 0.73 | 0.992155 |
Target: 5'- ------uUGGCAUUCGCUUUaCGAGAa -3' miRNA: 3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 122239 | 0.73 | 0.990917 |
Target: 5'- uCUuuAGAcGGCGCcgaccUCGCUUUUCGAGu -3' miRNA: 3'- -GAuuUCUaUCGUG-----AGCGAAAAGCUCu -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 24239 | 0.74 | 0.98227 |
Target: 5'- ------uUAGUACUCGCUUUaCGAGAa -3' miRNA: 3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 24041 | 0.74 | 0.98227 |
Target: 5'- ------uUAGUACUCGCUUUaCGAGAa -3' miRNA: 3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 23844 | 0.74 | 0.98227 |
Target: 5'- ------uUAGUACUCGCUUUaCGAGAa -3' miRNA: 3'- gauuucuAUCGUGAGCGAAAaGCUCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 122740 | 0.9 | 0.375276 |
Target: 5'- -----uAUAGCACUCGCUUUUCGAGAa -3' miRNA: 3'- gauuucUAUCGUGAGCGAAAAGCUCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 122678 | 0.9 | 0.375276 |
Target: 5'- -----uAUAGCACUCGCUUUUCGAGAa -3' miRNA: 3'- gauuucUAUCGUGAGCGAAAAGCUCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 19937 | 0.88 | 0.451942 |
Target: 5'- uUAAAGAUAGCACUUGUUUUUCGAu- -3' miRNA: 3'- gAUUUCUAUCGUGAGCGAAAAGCUcu -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 122434 | 0.83 | 0.704243 |
Target: 5'- uCUAAAGAUAGCACUUGUUUUUCa--- -3' miRNA: 3'- -GAUUUCUAUCGUGAGCGAAAAGcucu -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 66941 | 0.81 | 0.768816 |
Target: 5'- --uAAGAUAGCACUCGUUUUUCGcguacAGAc -3' miRNA: 3'- gauUUCUAUCGUGAGCGAAAAGC-----UCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 5736 | 0.73 | 0.987983 |
Target: 5'- ---cGGGUGGCGCUCGUcUUUCG-GAg -3' miRNA: 3'- gauuUCUAUCGUGAGCGaAAAGCuCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 80813 | 0.73 | 0.98953 |
Target: 5'- uUAAAGAgUGGCACaCGCUgUUCGAGu -3' miRNA: 3'- gAUUUCU-AUCGUGaGCGAaAAGCUCu -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 95197 | 0.66 | 0.999989 |
Target: 5'- ----cGAUAGUACUCGUUgaggcCGGGGu -3' miRNA: 3'- gauuuCUAUCGUGAGCGAaaa--GCUCU- -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 125053 | 0.66 | 0.999993 |
Target: 5'- -------aGGUACUCGUUUUUCGAa- -3' miRNA: 3'- gauuucuaUCGUGAGCGAAAAGCUcu -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 124931 | 0.66 | 0.999993 |
Target: 5'- -------aGGUACUCGUUUUUCGAa- -3' miRNA: 3'- gauuucuaUCGUGAGCGAAAAGCUcu -5' |
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21235 | 5' | -44.4 | NC_004778.3 | + | 66616 | 1.11 | 0.025158 |
Target: 5'- uCUAAAGAUAGCACUCGCUUUUCGAGAa -3' miRNA: 3'- -GAUUUCUAUCGUGAGCGAAAAGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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