Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 21236 | 3' | -47.5 | NC_004778.3 | + | 20040 | 0.66 | 0.999677 |
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Target: 5'- aCguAAGAUAGCACU-GCgaggUCGGc -3' miRNA: 3'- aGguUUCUAUCGUGAgCGaaa-AGCCc -5' |
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| 21236 | 3' | -47.5 | NC_004778.3 | + | 49455 | 0.66 | 0.999677 |
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Target: 5'- gUCCAAuGAccGCGCcgCGCUgUUCGGc -3' miRNA: 3'- -AGGUUuCUauCGUGa-GCGAaAAGCCc -5' |
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| 21236 | 3' | -47.5 | NC_004778.3 | + | 19686 | 0.66 | 0.999677 |
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Target: 5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5' |
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| 21236 | 3' | -47.5 | NC_004778.3 | + | 122238 | 0.66 | 0.999677 |
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Target: 5'- aUCUuuAGAcGGCGCcgaccUCGCUUUUCGa- -3' miRNA: 3'- -AGGuuUCUaUCGUG-----AGCGAAAAGCcc -5' |
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| 21236 | 3' | -47.5 | NC_004778.3 | + | 122670 | 0.66 | 0.999677 |
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Target: 5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5' |
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| 21236 | 3' | -47.5 | NC_004778.3 | + | 122411 | 0.66 | 0.999677 |
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Target: 5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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