Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21236 | 3' | -47.5 | NC_004778.3 | + | 122670 | 0.66 | 0.999677 |
|
Target: 5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5' |
|||||||
| 21236 | 3' | -47.5 | NC_004778.3 | + | 122681 | 0.72 | 0.955038 |
|
Target: 5'- gUCU----AUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGuuucUAUCGUGAGCGAAAAGCcc -5' |
|||||||
| 21236 | 3' | -47.5 | NC_004778.3 | + | 122743 | 0.72 | 0.955038 |
|
Target: 5'- gUCU----AUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGuuucUAUCGUGAGCGAAAAGCcc -5' |
|||||||
| 21236 | 3' | -47.5 | NC_004778.3 | + | 122793 | 0.71 | 0.975476 |
|
Target: 5'- -aCGuuuAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- agGUuucUAUCGUGAGCGAAAAGCcc -5' |
|||||||
| 21236 | 3' | -47.5 | NC_004778.3 | + | 122857 | 0.86 | 0.370073 |
|
Target: 5'- gUCUAAAGAUAGCACUUGUUUUUCGa- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
|||||||
| 21236 | 3' | -47.5 | NC_004778.3 | + | 124996 | 0.66 | 0.999203 |
|
Target: 5'- gUCUGA----GGCAUUCGUUUUUCGGa -3' miRNA: 3'- -AGGUUucuaUCGUGAGCGAAAAGCCc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home