Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21236 | 3' | -47.5 | NC_004778.3 | + | 99281 | 0.81 | 0.589027 |
Target: 5'- ---uAAGAUAGCGCUCGCUUUUCGa- -3' miRNA: 3'- agguUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 95211 | 0.7 | 0.988118 |
Target: 5'- gCCGGAaguagcgccGAUAGUACUCGUUgaggcCGGGg -3' miRNA: 3'- aGGUUU---------CUAUCGUGAGCGAaaa--GCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 67007 | 1.05 | 0.030369 |
Target: 5'- cCUAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- aGGUUUCUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66944 | 0.8 | 0.676371 |
Target: 5'- aCguAAGAUAGCACUCGUUUUUCGc- -3' miRNA: 3'- aGguUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66879 | 1.12 | 0.010828 |
Target: 5'- gUCCAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66813 | 1.12 | 0.010828 |
Target: 5'- gUCCAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66747 | 0.95 | 0.114119 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66682 | 0.92 | 0.186975 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGccc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66617 | 0.95 | 0.114119 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66544 | 0.69 | 0.992144 |
Target: 5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3' miRNA: 3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 49455 | 0.66 | 0.999677 |
Target: 5'- gUCCAAuGAccGCGCcgCGCUgUUCGGc -3' miRNA: 3'- -AGGUUuCUauCGUGa-GCGAaAAGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 35989 | 0.66 | 0.999591 |
Target: 5'- gCCGucaacucguuGGGAUGGCAC-CGCacggCGGGc -3' miRNA: 3'- aGGU----------UUCUAUCGUGaGCGaaaaGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 29324 | 0.73 | 0.950759 |
Target: 5'- cUUCGAAGGUGGCGCggCGCgcgcUGGGg -3' miRNA: 3'- -AGGUUUCUAUCGUGa-GCGaaaaGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 28699 | 0.67 | 0.999018 |
Target: 5'- gCCAAcaAUAGCGCUCGCUgcagCGc- -3' miRNA: 3'- aGGUUucUAUCGUGAGCGAaaa-GCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 24364 | 0.73 | 0.930971 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAaGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 24165 | 0.73 | 0.930971 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAaGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 23967 | 0.73 | 0.930971 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAaGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 20160 | 1.12 | 0.010828 |
Target: 5'- gUCCAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 20040 | 0.66 | 0.999677 |
Target: 5'- aCguAAGAUAGCACU-GCgaggUCGGc -3' miRNA: 3'- aGguUUCUAUCGUGAgCGaaa-AGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 20022 | 0.71 | 0.980462 |
Target: 5'- aUCUuuGGAcguGCGucggcgccgacCUCGCUUUUCGGGa -3' miRNA: 3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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