Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21236 | 3' | -47.5 | NC_004778.3 | + | 122743 | 0.72 | 0.955038 |
Target: 5'- gUCU----AUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGuuucUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 29324 | 0.73 | 0.950759 |
Target: 5'- cUUCGAAGGUGGCGCggCGCgcgcUGGGg -3' miRNA: 3'- -AGGUUUCUAUCGUGa-GCGaaaaGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 24165 | 0.73 | 0.930971 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAaGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 24364 | 0.73 | 0.930971 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAaGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 23967 | 0.73 | 0.930971 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAaGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 19938 | 0.79 | 0.697996 |
Target: 5'- gUUAAAGAUAGCACUUGUUUUUCGa- -3' miRNA: 3'- aGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 5745 | 0.8 | 0.676371 |
Target: 5'- gCCAAaagacGGGUGGCGCUCGUcUUUCGGa -3' miRNA: 3'- aGGUU-----UCUAUCGUGAGCGaAAAGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66944 | 0.8 | 0.676371 |
Target: 5'- aCguAAGAUAGCACUCGUUUUUCGc- -3' miRNA: 3'- aGguUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99618 | 0.81 | 0.621764 |
Target: 5'- gUCUAAAaAUAaCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUcUAUcGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99281 | 0.81 | 0.589027 |
Target: 5'- ---uAAGAUAGCGCUCGCUUUUCGa- -3' miRNA: 3'- agguUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122435 | 0.82 | 0.545914 |
Target: 5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGccc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122857 | 0.86 | 0.370073 |
Target: 5'- gUCUAAAGAUAGCACUUGUUUUUCGa- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99881 | 0.89 | 0.262675 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99684 | 0.89 | 0.262675 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99750 | 0.89 | 0.262675 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99815 | 0.89 | 0.262675 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66682 | 0.92 | 0.186975 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGccc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99947 | 0.94 | 0.12758 |
Target: 5'- gUCUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66617 | 0.95 | 0.114119 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66747 | 0.95 | 0.114119 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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