Results 61 - 76 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21236 | 5' | -55.6 | NC_004778.3 | + | 24069 | 0.9 | 0.047802 |
Target: 5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 24135 | 0.91 | 0.038298 |
Target: 5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 24334 | 0.91 | 0.038298 |
Target: 5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 99417 | 0.91 | 0.041623 |
Target: 5'- -aCUCGGAAAGCGAGGUCGGCGCUc- -3' miRNA: 3'- aaGAGCUUUUCGCUCCAGCCGCGGcu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 122892 | 0.91 | 0.043995 |
Target: 5'- -aCUUGGAAAGCGGGGUCGGCGCCa- -3' miRNA: 3'- aaGAGCUUUUCGCUCCAGCCGCGGcu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 122777 | 0.91 | 0.041623 |
Target: 5'- cUUUUCGAGAaaAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AAGAGCUUU--UCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66974 | 0.92 | 0.032411 |
Target: 5'- gUUCUUaAAAAGCGAGGUCGGCGCCGAc -3' miRNA: 3'- -AAGAGcUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 99361 | 0.94 | 0.024515 |
Target: 5'- ---cCGAAAAGCGAGGUCGGCGCCGAc -3' miRNA: 3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 20192 | 0.97 | 0.015218 |
Target: 5'- gUUCcCGAAAAGCGAGGUCGGCGCCGAc -3' miRNA: 3'- -AAGaGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 122399 | 0.99 | 0.012151 |
Target: 5'- -aCUCGAAAAGCGAGGUCGGCGCCGu -3' miRNA: 3'- aaGAGCUUUUCGCUCCAGCCGCGGCu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66581 | 0.99 | 0.012151 |
Target: 5'- -aCUCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 19970 | 1.02 | 0.007112 |
Target: 5'- gUUCUCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66779 | 1.02 | 0.007112 |
Target: 5'- gUUCUCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66911 | 1.03 | 0.006535 |
Target: 5'- gUUCUCGAAAAGUGAGGUCGGCGCCGAc -3' miRNA: 3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 20070 | 1.06 | 0.00382 |
Target: 5'- gUUCUCGAAAAGCGAGGUCGGCGCCGAc -3' miRNA: 3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66845 | 1.06 | 0.00382 |
Target: 5'- gUUCUCGAAAAGCGAGGUCGGCGCCGAc -3' miRNA: 3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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