miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 122616 0.7 0.668629
Target:  5'- --aUCaAAAAGa-AGGUCGGCGCCGAc -3'
miRNA:   3'- aagAGcUUUUCgcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122638 0.81 0.176824
Target:  5'- uUUCUCGAAAAGCGAGugcuauaaacgugcGUCaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CAGcCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122651 0.86 0.082691
Target:  5'- gUUCcCGAAAAGCGAGGUCGGCGCUu- -3'
miRNA:   3'- -AAGaGCUUUUCGCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 122709 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122774 0.82 0.156614
Target:  5'- -aCUCGAAAAGUGGaGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUcCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122777 0.91 0.041623
Target:  5'- cUUUUCGAGAaaAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGCUUU--UCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122819 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122830 0.76 0.344023
Target:  5'- -aCUUGGAAAGCGGGaUCGGCGuuGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUCcAGCCGCggCU- -5'
21236 5' -55.6 NC_004778.3 + 122892 0.91 0.043995
Target:  5'- -aCUUGGAAAGCGGGGUCGGCGCCa- -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 122977 0.89 0.056403
Target:  5'- ---cCGAAAAGCGGGGUUGGCGCCGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 124965 0.78 0.265642
Target:  5'- gUUCUCcAAAAGCGGGGUCGGgCGgCGAu -3'
miRNA:   3'- -AAGAGcUUUUCGCUCCAGCC-GCgGCU- -5'
21236 5' -55.6 NC_004778.3 + 124982 0.84 0.119469
Target:  5'- uUUUUCGGAacgucuguacuuaaAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGCUU--------------UUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 125026 0.82 0.164946
Target:  5'- -gUUCGGAAAGCGGGGUCGGCGauGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCggCU- -5'
21236 5' -55.6 NC_004778.3 + 125087 0.85 0.094658
Target:  5'- -aCUC-AAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGcUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 125190 0.68 0.804615
Target:  5'- aUCgUCGGugaccuucaCGAGGUCGGCGCCc- -3'
miRNA:   3'- aAG-AGCUuuuc-----GCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 125218 0.7 0.678979
Target:  5'- -aCUUGAAAAuCGGGGUCaGCGCCa- -3'
miRNA:   3'- aaGAGCUUUUcGCUCCAGcCGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.