Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21236 | 5' | -55.6 | NC_004778.3 | + | 66855 | 0.77 | 0.312987 |
Target: 5'- ---cCGAAAAGCGAGGcuaucuuuaggcgUCGGCGCCGu -3' miRNA: 3'- aagaGCUUUUCGCUCC-------------AGCCGCGGCu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66845 | 1.06 | 0.00382 |
Target: 5'- gUUCUCGAAAAGCGAGGUCGGCGCCGAc -3' miRNA: 3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66784 | 0.67 | 0.836028 |
Target: 5'- gUCUguacgCGAAAAaCGAGugcuaucuuacgugcGUCGGCGCCGAc -3' miRNA: 3'- aAGA-----GCUUUUcGCUC---------------CAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66779 | 1.02 | 0.007112 |
Target: 5'- gUUCUCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66718 | 0.69 | 0.708735 |
Target: 5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3' miRNA: 3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66710 | 0.9 | 0.04523 |
Target: 5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66652 | 0.69 | 0.708735 |
Target: 5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3' miRNA: 3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66590 | 0.72 | 0.551564 |
Target: 5'- gUUCUCGAAAAGCGAGugcuaucuuuagacGUgCGucaGCGCCGAc -3' miRNA: 3'- -AAGAGCUUUUCGCUC--------------CA-GC---CGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66581 | 0.99 | 0.012151 |
Target: 5'- -aCUCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGCUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 66459 | 0.81 | 0.175467 |
Target: 5'- gUUCUCGAAAAGCGAgugcuaucuuuagacGugcGUCGGCGCCGAu -3' miRNA: 3'- -AAGAGCUUUUCGCU---------------C---CAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 60949 | 0.69 | 0.759545 |
Target: 5'- -aCUCuu-GAGCGuGGUCGGCGCa-- -3' miRNA: 3'- aaGAGcuuUUCGCuCCAGCCGCGgcu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 52475 | 0.66 | 0.893791 |
Target: 5'- -gCUCGuuuGGCGAaaaGGcagCGGCGCUGGa -3' miRNA: 3'- aaGAGCuuuUCGCU---CCa--GCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 48920 | 0.72 | 0.554623 |
Target: 5'- -aCUCGAAca-CGAGGUCGGCGCa-- -3' miRNA: 3'- aaGAGCUUuucGCUCCAGCCGCGgcu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 42498 | 0.67 | 0.81534 |
Target: 5'- --gUUGAGGgcGGCGuGGUCGGCGugcCCGAc -3' miRNA: 3'- aagAGCUUU--UCGCuCCAGCCGC---GGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 31403 | 0.71 | 0.627011 |
Target: 5'- uUUCUCGGc--GCGAGGUgCGcGCGCCa- -3' miRNA: 3'- -AAGAGCUuuuCGCUCCA-GC-CGCGGcu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 24403 | 0.67 | 0.85719 |
Target: 5'- ----aGAAAAGCacGGUCGGCGuuGAc -3' miRNA: 3'- aagagCUUUUCGcuCCAGCCGCggCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 24334 | 0.91 | 0.038298 |
Target: 5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 24267 | 0.83 | 0.133861 |
Target: 5'- -aCUCGaAAAAGCGcGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGC-UUUUCGCuCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 24196 | 0.85 | 0.094658 |
Target: 5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3' miRNA: 3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 24135 | 0.91 | 0.038298 |
Target: 5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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