Results 61 - 76 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21236 | 5' | -55.6 | NC_004778.3 | + | 122651 | 0.86 | 0.082691 |
Target: 5'- gUUCcCGAAAAGCGAGGUCGGCGCUu- -3' miRNA: 3'- -AAGaGCUUUUCGCUCCAGCCGCGGcu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 108551 | 0.66 | 0.87983 |
Target: 5'- ---gCGGcaAAAGCGuGGUCGGCGgCGu -3' miRNA: 3'- aagaGCU--UUUCGCuCCAGCCGCgGCu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 21657 | 0.67 | 0.81534 |
Target: 5'- gUUUCGGccGGCGGuGG-CGGCGCCa- -3' miRNA: 3'- aAGAGCUuuUCGCU-CCaGCCGCGGcu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 125218 | 0.7 | 0.678979 |
Target: 5'- -aCUUGAAAAuCGGGGUCaGCGCCa- -3' miRNA: 3'- aaGAGCUUUUcGCUCCAGcCGCGGcu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 122616 | 0.7 | 0.668629 |
Target: 5'- --aUCaAAAAGa-AGGUCGGCGCCGAc -3' miRNA: 3'- aagAGcUUUUCgcUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 31403 | 0.71 | 0.627011 |
Target: 5'- uUUCUCGGc--GCGAGGUgCGcGCGCCa- -3' miRNA: 3'- -AAGAGCUuuuCGCUCCA-GC-CGCGGcu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 122239 | 0.72 | 0.564853 |
Target: 5'- -aCUUGAAAAGCGGGGUCaaUGCUGAu -3' miRNA: 3'- aaGAGCUUUUCGCUCCAGccGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 114067 | 0.73 | 0.534334 |
Target: 5'- cUCUCcgcGAGCGAGGaacccgCGGCGCCGc -3' miRNA: 3'- aAGAGcuuUUCGCUCCa-----GCCGCGGCu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 20035 | 0.77 | 0.321101 |
Target: 5'- ----aGAuagcacuGCGAGGUCGGCGCCGAc -3' miRNA: 3'- aagagCUuuu----CGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 125026 | 0.82 | 0.164946 |
Target: 5'- -gUUCGGAAAGCGGGGUCGGCGauGAc -3' miRNA: 3'- aaGAGCUUUUCGCUCCAGCCGCggCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 122340 | 0.84 | 0.120425 |
Target: 5'- -aCUCGAAAAGCaAGGUCGGCGCUGc -3' miRNA: 3'- aaGAGCUUUUCGcUCCAGCCGCGGCu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 124982 | 0.84 | 0.119469 |
Target: 5'- uUUUUCGGAacgucuguacuuaaAAGCGGGGUCGGCGCUGAc -3' miRNA: 3'- -AAGAGCUU--------------UUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 122303 | 0.84 | 0.111182 |
Target: 5'- -aCUUGAAAAGCaAGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGCUUUUCGcUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 125087 | 0.85 | 0.094658 |
Target: 5'- -aCUC-AAAAGCGGGGUCGGCGCUGAc -3' miRNA: 3'- aaGAGcUUUUCGCUCCAGCCGCGGCU- -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 19835 | 0.86 | 0.087294 |
Target: 5'- ---cCGAAAAGCGAGGUCGGCGCUGc -3' miRNA: 3'- aagaGCUUUUCGCUCCAGCCGCGGCu -5' |
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21236 | 5' | -55.6 | NC_004778.3 | + | 52475 | 0.66 | 0.893791 |
Target: 5'- -gCUCGuuuGGCGAaaaGGcagCGGCGCUGGa -3' miRNA: 3'- aaGAGCuuuUCGCU---CCa--GCCGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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