miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 66710 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66581 0.99 0.012151
Target:  5'- -aCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 20122 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 21657 0.67 0.81534
Target:  5'- gUUUCGGccGGCGGuGG-CGGCGCCa- -3'
miRNA:   3'- aAGAGCUuuUCGCU-CCaGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 122399 0.99 0.012151
Target:  5'- -aCUCGAAAAGCGAGGUCGGCGCCGu -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 122777 0.91 0.041623
Target:  5'- cUUUUCGAGAaaAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGCUUU--UCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19970 1.02 0.007112
Target:  5'- gUUCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 20070 1.06 0.00382
Target:  5'- gUUCUCGAAAAGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 108551 0.66 0.87983
Target:  5'- ---gCGGcaAAAGCGuGGUCGGCGgCGu -3'
miRNA:   3'- aagaGCU--UUUCGCuCCAGCCGCgGCu -5'
21236 5' -55.6 NC_004778.3 + 52475 0.66 0.893791
Target:  5'- -gCUCGuuuGGCGAaaaGGcagCGGCGCUGGa -3'
miRNA:   3'- aaGAGCuuuUCGCU---CCa--GCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122616 0.7 0.668629
Target:  5'- --aUCaAAAAGa-AGGUCGGCGCCGAc -3'
miRNA:   3'- aagAGcUUUUCgcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 114067 0.73 0.534334
Target:  5'- cUCUCcgcGAGCGAGGaacccgCGGCGCCGc -3'
miRNA:   3'- aAGAGcuuUUCGCUCCa-----GCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 125218 0.7 0.678979
Target:  5'- -aCUUGAAAAuCGGGGUCaGCGCCa- -3'
miRNA:   3'- aaGAGCUUUUcGCUCCAGcCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 24069 0.9 0.047802
Target:  5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19998 0.69 0.708735
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 112022 0.72 0.585453
Target:  5'- -gCUCGGGAaacAGCG-GGUCGGgGUCGGg -3'
miRNA:   3'- aaGAGCUUU---UCGCuCCAGCCgCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 48920 0.72 0.554623
Target:  5'- -aCUCGAAca-CGAGGUCGGCGCa-- -3'
miRNA:   3'- aaGAGCUUuucGCUCCAGCCGCGgcu -5'
21236 5' -55.6 NC_004778.3 + 66590 0.72 0.551564
Target:  5'- gUUCUCGAAAAGCGAGugcuaucuuuagacGUgCGucaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CA-GC---CGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23938 0.82 0.148665
Target:  5'- -aCUCGAAAcGCGAGG-CGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCaGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122774 0.82 0.156614
Target:  5'- -aCUCGAAAAGUGGaGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUcCAGCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.