miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 122892 0.91 0.043995
Target:  5'- -aCUUGGAAAGCGGGGUCGGCGCCa- -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 23872 0.9 0.047802
Target:  5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24069 0.9 0.047802
Target:  5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23801 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 113928 0.66 0.899766
Target:  5'- cUCgCGGAGAGCGAgcgcggcGGaUGGCGCaCGAu -3'
miRNA:   3'- aAGaGCUUUUCGCU-------CCaGCCGCG-GCU- -5'
21236 5' -55.6 NC_004778.3 + 19716 0.72 0.551564
Target:  5'- gUUCUCGAAAAGCGAGugcuaucuuuagacGUgCGucaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CA-GC---CGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66590 0.72 0.551564
Target:  5'- gUUCUCGAAAAGCGAGugcuaucuuuagacGUgCGucaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CA-GC---CGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 48920 0.72 0.554623
Target:  5'- -aCUCGAAca-CGAGGUCGGCGCa-- -3'
miRNA:   3'- aaGAGCUUuucGCUCCAGCCGCGgcu -5'
21236 5' -55.6 NC_004778.3 + 112022 0.72 0.585453
Target:  5'- -gCUCGGGAaacAGCG-GGUCGGgGUCGGg -3'
miRNA:   3'- aaGAGCUUU---UCGCuCCAGCCgCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19998 0.69 0.708735
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122830 0.76 0.344023
Target:  5'- -aCUUGGAAAGCGGGaUCGGCGuuGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUCcAGCCGCggCU- -5'
21236 5' -55.6 NC_004778.3 + 66855 0.77 0.312987
Target:  5'- ---cCGAAAAGCGAGGcuaucuuuaggcgUCGGCGCCGu -3'
miRNA:   3'- aagaGCUUUUCGCUCC-------------AGCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 124965 0.78 0.265642
Target:  5'- gUUCUCcAAAAGCGGGGUCGGgCGgCGAu -3'
miRNA:   3'- -AAGAGcUUUUCGCUCCAGCC-GCgGCU- -5'
21236 5' -55.6 NC_004778.3 + 99652 0.79 0.229335
Target:  5'- gUUCUCaAAAAGCaGGGUCGGCGCUGGc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 99586 0.81 0.18281
Target:  5'- gUUCUCaAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66784 0.67 0.836028
Target:  5'- gUCUguacgCGAAAAaCGAGugcuaucuuacgugcGUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUcGCUC---------------CAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 99915 0.67 0.849213
Target:  5'- gUUCUCaAAAAGCaGGGUCGaCGCUGGc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCcGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24403 0.67 0.85719
Target:  5'- ----aGAAAAGCacGGUCGGCGuuGAc -3'
miRNA:   3'- aagagCUUUUCGcuCCAGCCGCggCU- -5'
21236 5' -55.6 NC_004778.3 + 73199 0.66 0.864956
Target:  5'- --aUCGAAAAGCaGGGUacggcucgcguUGGCGCCa- -3'
miRNA:   3'- aagAGCUUUUCGcUCCA-----------GCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 99718 0.66 0.872505
Target:  5'- gUUCUCaAAAGGCaGGGUCGaCGCUGGc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCcGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.