miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 42498 0.67 0.81534
Target:  5'- --gUUGAGGgcGGCGuGGUCGGCGugcCCGAc -3'
miRNA:   3'- aagAGCUUU--UCGCuCCAGCCGC---GGCU- -5'
21236 5' -55.6 NC_004778.3 + 125190 0.68 0.804615
Target:  5'- aUCgUCGGugaccuucaCGAGGUCGGCGCCc- -3'
miRNA:   3'- aAG-AGCUuuuc-----GCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 99849 0.68 0.797336
Target:  5'- gUUCUCaAAAGGCaGGGUCGaCGCUGAc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCcGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 60949 0.69 0.759545
Target:  5'- -aCUCuu-GAGCGuGGUCGGCGCa-- -3'
miRNA:   3'- aaGAGcuuUUCGCuCCAGCCGCGgcu -5'
21236 5' -55.6 NC_004778.3 + 19843 0.69 0.713815
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuaaacGugcGUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU---------------C---CAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66718 0.69 0.708735
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66652 0.69 0.708735
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 112022 0.72 0.585453
Target:  5'- -gCUCGGGAaacAGCG-GGUCGGgGUCGGg -3'
miRNA:   3'- aaGAGCUUU---UCGCuCCAGCCgCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 48920 0.72 0.554623
Target:  5'- -aCUCGAAca-CGAGGUCGGCGCa-- -3'
miRNA:   3'- aaGAGCUUuucGCUCCAGCCGCGgcu -5'
21236 5' -55.6 NC_004778.3 + 66590 0.72 0.551564
Target:  5'- gUUCUCGAAAAGCGAGugcuaucuuuagacGUgCGucaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CA-GC---CGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19716 0.72 0.551564
Target:  5'- gUUCUCGAAAAGCGAGugcuaucuuuagacGUgCGucaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CA-GC---CGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 99243 0.73 0.484884
Target:  5'- -gCUCGuauuuguAAAGCGAGGUCG-CGCUGAc -3'
miRNA:   3'- aaGAGCu------UUUCGCUCCAGCcGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122830 0.76 0.344023
Target:  5'- -aCUUGGAAAGCGGGaUCGGCGuuGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUCcAGCCGCggCU- -5'
21236 5' -55.6 NC_004778.3 + 66855 0.77 0.312987
Target:  5'- ---cCGAAAAGCGAGGcuaucuuuaggcgUCGGCGCCGu -3'
miRNA:   3'- aagaGCUUUUCGCUCC-------------AGCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 124965 0.78 0.265642
Target:  5'- gUUCUCcAAAAGCGGGGUCGGgCGgCGAu -3'
miRNA:   3'- -AAGAGcUUUUCGCUCCAGCC-GCgGCU- -5'
21236 5' -55.6 NC_004778.3 + 99361 0.94 0.024515
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.