miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 112022 0.72 0.585453
Target:  5'- -gCUCGGGAaacAGCG-GGUCGGgGUCGGg -3'
miRNA:   3'- aaGAGCUUU---UCGCuCCAGCCgCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122239 0.72 0.564853
Target:  5'- -aCUUGAAAAGCGGGGUCaaUGCUGAu -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGccGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 48920 0.72 0.554623
Target:  5'- -aCUCGAAca-CGAGGUCGGCGCa-- -3'
miRNA:   3'- aaGAGCUUuucGCUCCAGCCGCGgcu -5'
21236 5' -55.6 NC_004778.3 + 66590 0.72 0.551564
Target:  5'- gUUCUCGAAAAGCGAGugcuaucuuuagacGUgCGucaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CA-GC---CGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19716 0.72 0.551564
Target:  5'- gUUCUCGAAAAGCGAGugcuaucuuuagacGUgCGucaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CA-GC---CGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 114067 0.73 0.534334
Target:  5'- cUCUCcgcGAGCGAGGaacccgCGGCGCCGc -3'
miRNA:   3'- aAGAGcuuUUCGCUCCa-----GCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 99243 0.73 0.484884
Target:  5'- -gCUCGuauuuguAAAGCGAGGUCG-CGCUGAc -3'
miRNA:   3'- aaGAGCu------UUUCGCUCCAGCcGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122830 0.76 0.344023
Target:  5'- -aCUUGGAAAGCGGGaUCGGCGuuGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUCcAGCCGCggCU- -5'
21236 5' -55.6 NC_004778.3 + 20035 0.77 0.321101
Target:  5'- ----aGAuagcacuGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- aagagCUuuu----CGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66855 0.77 0.312987
Target:  5'- ---cCGAAAAGCGAGGcuaucuuuaggcgUCGGCGCCGu -3'
miRNA:   3'- aagaGCUUUUCGCUCC-------------AGCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 124965 0.78 0.265642
Target:  5'- gUUCUCcAAAAGCGGGGUCGGgCGgCGAu -3'
miRNA:   3'- -AAGAGcUUUUCGCUCCAGCC-GCgGCU- -5'
21236 5' -55.6 NC_004778.3 + 99652 0.79 0.229335
Target:  5'- gUUCUCaAAAAGCaGGGUCGGCGCUGGc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 99586 0.81 0.18281
Target:  5'- gUUCUCaAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122528 0.81 0.176824
Target:  5'- gUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CAGcCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122590 0.81 0.176824
Target:  5'- gUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CAGcCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122638 0.81 0.176824
Target:  5'- uUUCUCGAAAAGCGAGugcuauaaacgugcGUCaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CAGcCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66459 0.81 0.175467
Target:  5'- gUUCUCGAAAAGCGAgugcuaucuuuagacGugcGUCGGCGCCGAu -3'
miRNA:   3'- -AAGAGCUUUUCGCU---------------C---CAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 125026 0.82 0.164946
Target:  5'- -gUUCGGAAAGCGGGGUCGGCGauGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCggCU- -5'
21236 5' -55.6 NC_004778.3 + 122774 0.82 0.156614
Target:  5'- -aCUCGAAAAGUGGaGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUcCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23938 0.82 0.148665
Target:  5'- -aCUCGAAAcGCGAGG-CGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCaGCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.