Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21237 | 3' | -56 | NC_004778.3 | + | 25749 | 0.66 | 0.900205 |
Target: 5'- gCGUCaGUGUCGGcaggcCGGCCAGCaUACUGa -3' miRNA: 3'- aGCAG-CGCGGCCa----GUUGGUUG-GUGAC- -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 122398 | 0.66 | 0.893657 |
Target: 5'- gCGUCGCGUgcGUCAgcGCCGACCucGCUu -3' miRNA: 3'- aGCAGCGCGgcCAGU--UGGUUGG--UGAc -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 4567 | 0.66 | 0.893657 |
Target: 5'- gCGcUGUGCCGcGUUagcaGACUGGCCACUGu -3' miRNA: 3'- aGCaGCGCGGC-CAG----UUGGUUGGUGAC- -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 33012 | 0.66 | 0.891647 |
Target: 5'- gCGUCGCaucauugccgcgauGUCGGcCAcguagGCCAGCCGCg- -3' miRNA: 3'- aGCAGCG--------------CGGCCaGU-----UGGUUGGUGac -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 95344 | 0.66 | 0.87987 |
Target: 5'- cCGUCGgcaGCCGGgCAGuuaCAACCGCUc -3' miRNA: 3'- aGCAGCg--CGGCCaGUUg--GUUGGUGAc -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 58146 | 0.66 | 0.87987 |
Target: 5'- cUCGUUGCGCaGcGUCAACUGAaacguaCGCUGc -3' miRNA: 3'- -AGCAGCGCGgC-CAGUUGGUUg-----GUGAC- -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 81908 | 0.66 | 0.87987 |
Target: 5'- cCGgCGCaGUCGGUCcGCCAcccGCCGCg- -3' miRNA: 3'- aGCaGCG-CGGCCAGuUGGU---UGGUGac -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 61627 | 0.66 | 0.87264 |
Target: 5'- gCGUUugGCGCCGcG-CAGCCAGCgCGCg- -3' miRNA: 3'- aGCAG--CGCGGC-CaGUUGGUUG-GUGac -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 52515 | 0.66 | 0.865193 |
Target: 5'- aUUG-CGCcaGCCGGcCGGCCAACUGCg- -3' miRNA: 3'- -AGCaGCG--CGGCCaGUUGGUUGGUGac -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 20371 | 0.66 | 0.865193 |
Target: 5'- ---aCGCGUCGGUUuuAGCCAagGCCGCa- -3' miRNA: 3'- agcaGCGCGGCCAG--UUGGU--UGGUGac -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 34560 | 0.67 | 0.857533 |
Target: 5'- cCG-CGCuGCCGGagCAGCCcGGCCACg- -3' miRNA: 3'- aGCaGCG-CGGCCa-GUUGG-UUGGUGac -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 59030 | 0.67 | 0.849667 |
Target: 5'- ---cUGCGUCGG-CGGCUAACCGCUc -3' miRNA: 3'- agcaGCGCGGCCaGUUGGUUGGUGAc -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 46902 | 0.67 | 0.841603 |
Target: 5'- aCGUaCGCGCUGGcCGcuGCCcGCUACUa -3' miRNA: 3'- aGCA-GCGCGGCCaGU--UGGuUGGUGAc -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 27476 | 0.67 | 0.841603 |
Target: 5'- uUCGggcaaCGUGCC-GUgGGCCGACCACa- -3' miRNA: 3'- -AGCa----GCGCGGcCAgUUGGUUGGUGac -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 111556 | 0.67 | 0.824904 |
Target: 5'- uUCGUCGUugaGCUGG-CGACCGGgCGCg- -3' miRNA: 3'- -AGCAGCG---CGGCCaGUUGGUUgGUGac -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 45159 | 0.67 | 0.824904 |
Target: 5'- gCGUCcgGCGCaaGGUCcaaAACCAGCgACUGg -3' miRNA: 3'- aGCAG--CGCGg-CCAG---UUGGUUGgUGAC- -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 39186 | 0.68 | 0.816285 |
Target: 5'- gCGUCGCccGCuaCGGUCAugCAGgCGCUa -3' miRNA: 3'- aGCAGCG--CG--GCCAGUugGUUgGUGAc -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 2554 | 0.68 | 0.789447 |
Target: 5'- gUCGUCGgGCgCGGgcacgUCGGCC-ACCGCg- -3' miRNA: 3'- -AGCAGCgCG-GCC-----AGUUGGuUGGUGac -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 116755 | 0.68 | 0.789447 |
Target: 5'- --cUCGcCGCCGGUCGGCUGACUggcgacguguacGCUGu -3' miRNA: 3'- agcAGC-GCGGCCAGUUGGUUGG------------UGAC- -5' |
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21237 | 3' | -56 | NC_004778.3 | + | 60448 | 0.68 | 0.780203 |
Target: 5'- aCGUCGaCGCCGuUUAaagacuuccGCCGGCUGCUGg -3' miRNA: 3'- aGCAGC-GCGGCcAGU---------UGGUUGGUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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