miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21237 3' -56 NC_004778.3 + 931 0.78 0.264249
Target:  5'- uUCGUCuaacuggGCGCUGGUCAGCUuuGACCAUUGa -3'
miRNA:   3'- -AGCAG-------CGCGGCCAGUUGG--UUGGUGAC- -5'
21237 3' -56 NC_004778.3 + 2554 0.68 0.789447
Target:  5'- gUCGUCGgGCgCGGgcacgUCGGCC-ACCGCg- -3'
miRNA:   3'- -AGCAGCgCG-GCC-----AGUUGGuUGGUGac -5'
21237 3' -56 NC_004778.3 + 4567 0.66 0.893657
Target:  5'- gCGcUGUGCCGcGUUagcaGACUGGCCACUGu -3'
miRNA:   3'- aGCaGCGCGGC-CAG----UUGGUUGGUGAC- -5'
21237 3' -56 NC_004778.3 + 7365 0.8 0.223543
Target:  5'- gCG-CGUGCCGGUCGACCGcguACCGCUu -3'
miRNA:   3'- aGCaGCGCGGCCAGUUGGU---UGGUGAc -5'
21237 3' -56 NC_004778.3 + 9414 0.71 0.63064
Target:  5'- cCG-CGCGCUGGUCAaACCAcuuuuguguuACCACg- -3'
miRNA:   3'- aGCaGCGCGGCCAGU-UGGU----------UGGUGac -5'
21237 3' -56 NC_004778.3 + 14538 0.73 0.519171
Target:  5'- aCGUCGUGCCGGaCGACCGcgcguCCAUg- -3'
miRNA:   3'- aGCAGCGCGGCCaGUUGGUu----GGUGac -5'
21237 3' -56 NC_004778.3 + 20371 0.66 0.865193
Target:  5'- ---aCGCGUCGGUUuuAGCCAagGCCGCa- -3'
miRNA:   3'- agcaGCGCGGCCAG--UUGGU--UGGUGac -5'
21237 3' -56 NC_004778.3 + 25749 0.66 0.900205
Target:  5'- gCGUCaGUGUCGGcaggcCGGCCAGCaUACUGa -3'
miRNA:   3'- aGCAG-CGCGGCCa----GUUGGUUG-GUGAC- -5'
21237 3' -56 NC_004778.3 + 27476 0.67 0.841603
Target:  5'- uUCGggcaaCGUGCC-GUgGGCCGACCACa- -3'
miRNA:   3'- -AGCa----GCGCGGcCAgUUGGUUGGUGac -5'
21237 3' -56 NC_004778.3 + 29190 0.72 0.559088
Target:  5'- gUCGUCGC-UCGG-CAGCCAAUCGCg- -3'
miRNA:   3'- -AGCAGCGcGGCCaGUUGGUUGGUGac -5'
21237 3' -56 NC_004778.3 + 30804 0.71 0.620354
Target:  5'- aUUGUaCGCuaCGGggcagcUCGACCGGCCGCUGg -3'
miRNA:   3'- -AGCA-GCGcgGCC------AGUUGGUUGGUGAC- -5'
21237 3' -56 NC_004778.3 + 33012 0.66 0.891647
Target:  5'- gCGUCGCaucauugccgcgauGUCGGcCAcguagGCCAGCCGCg- -3'
miRNA:   3'- aGCAGCG--------------CGGCCaGU-----UGGUUGGUGac -5'
21237 3' -56 NC_004778.3 + 34306 0.69 0.741978
Target:  5'- cUUGUCGcCGCCGG-CGACCGcgucgucguacGCgCGCUGc -3'
miRNA:   3'- -AGCAGC-GCGGCCaGUUGGU-----------UG-GUGAC- -5'
21237 3' -56 NC_004778.3 + 34560 0.67 0.857533
Target:  5'- cCG-CGCuGCCGGagCAGCCcGGCCACg- -3'
miRNA:   3'- aGCaGCG-CGGCCa-GUUGG-UUGGUGac -5'
21237 3' -56 NC_004778.3 + 37792 0.75 0.434086
Target:  5'- aUUGUgGUGCCGGUCAcggcGCCGccgauuuuuuuACCGCUGu -3'
miRNA:   3'- -AGCAgCGCGGCCAGU----UGGU-----------UGGUGAC- -5'
21237 3' -56 NC_004778.3 + 39186 0.68 0.816285
Target:  5'- gCGUCGCccGCuaCGGUCAugCAGgCGCUa -3'
miRNA:   3'- aGCAGCG--CG--GCCAGUugGUUgGUGAc -5'
21237 3' -56 NC_004778.3 + 43566 0.69 0.722247
Target:  5'- gUCGUCGCuguccGCCGGcUCGcacGCCuGCCGCa- -3'
miRNA:   3'- -AGCAGCG-----CGGCC-AGU---UGGuUGGUGac -5'
21237 3' -56 NC_004778.3 + 44377 0.7 0.671712
Target:  5'- uUCGUCGCGcCCGGUCGcauuuccgucGCaGACUACa- -3'
miRNA:   3'- -AGCAGCGC-GGCCAGU----------UGgUUGGUGac -5'
21237 3' -56 NC_004778.3 + 45159 0.67 0.824904
Target:  5'- gCGUCcgGCGCaaGGUCcaaAACCAGCgACUGg -3'
miRNA:   3'- aGCAG--CGCGg-CCAG---UUGGUUGgUGAC- -5'
21237 3' -56 NC_004778.3 + 46902 0.67 0.841603
Target:  5'- aCGUaCGCGCUGGcCGcuGCCcGCUACUa -3'
miRNA:   3'- aGCA-GCGCGGCCaGU--UGGuUGGUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.