Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21237 | 5' | -52.9 | NC_004778.3 | + | 2471 | 0.66 | 0.955815 |
Target: 5'- uGCCGUcgGCACCGUacgcuugaacgUUGACgaCCaUGCAUg -3' miRNA: 3'- -CGGUAa-CGUGGCA-----------AACUG--GGcACGUA- -5' |
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21237 | 5' | -52.9 | NC_004778.3 | + | 111961 | 0.66 | 0.95169 |
Target: 5'- cGCCcUUGuUACCGgcgcGGCCCGUGgCAg -3' miRNA: 3'- -CGGuAAC-GUGGCaaa-CUGGGCAC-GUa -5' |
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21237 | 5' | -52.9 | NC_004778.3 | + | 38563 | 0.66 | 0.942685 |
Target: 5'- uGCCcgUGCGCgGUcuggUGAagaUCGUGCAc -3' miRNA: 3'- -CGGuaACGUGgCAa---ACUg--GGCACGUa -5' |
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21237 | 5' | -52.9 | NC_004778.3 | + | 93808 | 0.67 | 0.92725 |
Target: 5'- gGCgAUgUGCACCuUUUGGCCCGUaaugGCGc -3' miRNA: 3'- -CGgUA-ACGUGGcAAACUGGGCA----CGUa -5' |
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21237 | 5' | -52.9 | NC_004778.3 | + | 95631 | 0.68 | 0.87477 |
Target: 5'- gGCCGUUGCAuaGUggccaauucgGACgCGUGCAUu -3' miRNA: 3'- -CGGUAACGUggCAaa--------CUGgGCACGUA- -5' |
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21237 | 5' | -52.9 | NC_004778.3 | + | 32281 | 0.71 | 0.779017 |
Target: 5'- gGCCGgcgGCGCCGUgucgGGCUgGUGCu- -3' miRNA: 3'- -CGGUaa-CGUGGCAaa--CUGGgCACGua -5' |
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21237 | 5' | -52.9 | NC_004778.3 | + | 63169 | 0.74 | 0.580899 |
Target: 5'- aGCCcuucggugUGCACCGUUUGAaaCGUGCGc -3' miRNA: 3'- -CGGua------ACGUGGCAAACUggGCACGUa -5' |
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21237 | 5' | -52.9 | NC_004778.3 | + | 69578 | 1.08 | 0.004945 |
Target: 5'- cGCCAUUGCACCGUUUGACCCGUGCAUc -3' miRNA: 3'- -CGGUAACGUGGCAAACUGGGCACGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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