miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21237 5' -52.9 NC_004778.3 + 2471 0.66 0.955815
Target:  5'- uGCCGUcgGCACCGUacgcuugaacgUUGACgaCCaUGCAUg -3'
miRNA:   3'- -CGGUAa-CGUGGCA-----------AACUG--GGcACGUA- -5'
21237 5' -52.9 NC_004778.3 + 111961 0.66 0.95169
Target:  5'- cGCCcUUGuUACCGgcgcGGCCCGUGgCAg -3'
miRNA:   3'- -CGGuAAC-GUGGCaaa-CUGGGCAC-GUa -5'
21237 5' -52.9 NC_004778.3 + 38563 0.66 0.942685
Target:  5'- uGCCcgUGCGCgGUcuggUGAagaUCGUGCAc -3'
miRNA:   3'- -CGGuaACGUGgCAa---ACUg--GGCACGUa -5'
21237 5' -52.9 NC_004778.3 + 93808 0.67 0.92725
Target:  5'- gGCgAUgUGCACCuUUUGGCCCGUaaugGCGc -3'
miRNA:   3'- -CGgUA-ACGUGGcAAACUGGGCA----CGUa -5'
21237 5' -52.9 NC_004778.3 + 95631 0.68 0.87477
Target:  5'- gGCCGUUGCAuaGUggccaauucgGACgCGUGCAUu -3'
miRNA:   3'- -CGGUAACGUggCAaa--------CUGgGCACGUA- -5'
21237 5' -52.9 NC_004778.3 + 32281 0.71 0.779017
Target:  5'- gGCCGgcgGCGCCGUgucgGGCUgGUGCu- -3'
miRNA:   3'- -CGGUaa-CGUGGCAaa--CUGGgCACGua -5'
21237 5' -52.9 NC_004778.3 + 63169 0.74 0.580899
Target:  5'- aGCCcuucggugUGCACCGUUUGAaaCGUGCGc -3'
miRNA:   3'- -CGGua------ACGUGGCAAACUggGCACGUa -5'
21237 5' -52.9 NC_004778.3 + 69578 1.08 0.004945
Target:  5'- cGCCAUUGCACCGUUUGACCCGUGCAUc -3'
miRNA:   3'- -CGGUAACGUGGCAAACUGGGCACGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.