miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21239 3' -49.6 NC_004778.3 + 47933 0.66 0.997417
Target:  5'- -cAUGGUGGaca-GCGGcgcuaagGGCAGCGCc -3'
miRNA:   3'- ccUACCACCaaagCGUCa------CUGUUGCG- -5'
21239 3' -49.6 NC_004778.3 + 82966 0.66 0.997417
Target:  5'- uGAUGG-GGUUUUuaauuaCGGUGGC-GCGCa -3'
miRNA:   3'- cCUACCaCCAAAGc-----GUCACUGuUGCG- -5'
21239 3' -49.6 NC_004778.3 + 29532 0.66 0.995746
Target:  5'- -cGUGGUGGUgUCGCcc-GGCAAacCGCg -3'
miRNA:   3'- ccUACCACCAaAGCGucaCUGUU--GCG- -5'
21239 3' -49.6 NC_004778.3 + 58299 0.67 0.992245
Target:  5'- cGGGUGGcgcgcugGGcUUUGCAGgcguCGGCGCg -3'
miRNA:   3'- -CCUACCa------CCaAAGCGUCacu-GUUGCG- -5'
21239 3' -49.6 NC_004778.3 + 21659 0.68 0.988352
Target:  5'- ------aGGUUUCggccgGCGGUGGCGGCGCc -3'
miRNA:   3'- ccuaccaCCAAAG-----CGUCACUGUUGCG- -5'
21239 3' -49.6 NC_004778.3 + 77579 0.68 0.984829
Target:  5'- -aAUGGUGGUuaucgugUUUGUGGUGGCGcUGCu -3'
miRNA:   3'- ccUACCACCA-------AAGCGUCACUGUuGCG- -5'
21239 3' -49.6 NC_004778.3 + 15604 0.69 0.978699
Target:  5'- --uUGGcgUGGUcgCGCGGaGGCGGCGCu -3'
miRNA:   3'- ccuACC--ACCAaaGCGUCaCUGUUGCG- -5'
21239 3' -49.6 NC_004778.3 + 108250 0.69 0.97621
Target:  5'- --cUGGUGGUUcagGCAGUG-CcGCGCg -3'
miRNA:   3'- ccuACCACCAAag-CGUCACuGuUGCG- -5'
21239 3' -49.6 NC_004778.3 + 108887 0.7 0.956668
Target:  5'- aGGAaGGUGGUgcCGCGac-GCAGCGCu -3'
miRNA:   3'- -CCUaCCACCAaaGCGUcacUGUUGCG- -5'
21239 3' -49.6 NC_004778.3 + 61271 0.7 0.956668
Target:  5'- uGGAUGGgcUGGacgUUCGCAacGAgAACGCg -3'
miRNA:   3'- -CCUACC--ACCa--AAGCGUcaCUgUUGCG- -5'
21239 3' -49.6 NC_004778.3 + 94139 0.7 0.952581
Target:  5'- uGGAauUGuUGGaaagCGCAGUGuGCAGCGCg -3'
miRNA:   3'- -CCU--ACcACCaaa-GCGUCAC-UGUUGCG- -5'
21239 3' -49.6 NC_004778.3 + 95879 0.71 0.922675
Target:  5'- uGAUGGcgGGgccgUCGCGGcUGAguACGCa -3'
miRNA:   3'- cCUACCa-CCaa--AGCGUC-ACUguUGCG- -5'
21239 3' -49.6 NC_004778.3 + 101581 0.71 0.922675
Target:  5'- uGGaAUGGUGGaau--CGGUGACAugGCu -3'
miRNA:   3'- -CC-UACCACCaaagcGUCACUGUugCG- -5'
21239 3' -49.6 NC_004778.3 + 77776 1.14 0.005302
Target:  5'- uGGAUGGUGGUUUCGCAGUGACAACGCc -3'
miRNA:   3'- -CCUACCACCAAAGCGUCACUGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.