miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21239 5' -52.2 NC_004778.3 + 70008 0.66 0.959058
Target:  5'- uGGGCAGCGaCGCCAUucuGGCGCGc--- -3'
miRNA:   3'- -UUCGUCGCgGUGGUGu--UUGUGCuauu -5'
21239 5' -52.2 NC_004778.3 + 43985 0.66 0.959058
Target:  5'- uGGC-GCGCCGCC-CAAcGCGCGGc-- -3'
miRNA:   3'- uUCGuCGCGGUGGuGUU-UGUGCUauu -5'
21239 5' -52.2 NC_004778.3 + 60560 0.66 0.959058
Target:  5'- gAAGCgcaAGCGCaGCCGCAgaAACACGcUAAa -3'
miRNA:   3'- -UUCG---UCGCGgUGGUGU--UUGUGCuAUU- -5'
21239 5' -52.2 NC_004778.3 + 53813 0.66 0.959058
Target:  5'- uGGGCAGCGCCucaACGAGCAUa---- -3'
miRNA:   3'- -UUCGUCGCGGuggUGUUUGUGcuauu -5'
21239 5' -52.2 NC_004778.3 + 73679 0.66 0.958668
Target:  5'- aAAGCugcuGCGCCGCCgaauugcGCGuguACACGAg-- -3'
miRNA:   3'- -UUCGu---CGCGGUGG-------UGUu--UGUGCUauu -5'
21239 5' -52.2 NC_004778.3 + 50025 0.66 0.957879
Target:  5'- uAAGCgaaaAGCGCCAagcgacgaugcagcCCGCAAGCGCGc--- -3'
miRNA:   3'- -UUCG----UCGCGGU--------------GGUGUUUGUGCuauu -5'
21239 5' -52.2 NC_004778.3 + 24691 0.66 0.955038
Target:  5'- -cGCA-CGCUACCACAugcccgcacGGCACGAa-- -3'
miRNA:   3'- uuCGUcGCGGUGGUGU---------UUGUGCUauu -5'
21239 5' -52.2 NC_004778.3 + 1415 0.66 0.955038
Target:  5'- cAGCAGCG-CGCCGauCAAACACGc--- -3'
miRNA:   3'- uUCGUCGCgGUGGU--GUUUGUGCuauu -5'
21239 5' -52.2 NC_004778.3 + 38086 0.66 0.955038
Target:  5'- -uGCGGCGCgACgCGCAAcaGCACGcUAGc -3'
miRNA:   3'- uuCGUCGCGgUG-GUGUU--UGUGCuAUU- -5'
21239 5' -52.2 NC_004778.3 + 101066 0.66 0.955038
Target:  5'- gAGGCcGuCGCCGCCGCAAAUggGuAUGAa -3'
miRNA:   3'- -UUCGuC-GCGGUGGUGUUUGugC-UAUU- -5'
21239 5' -52.2 NC_004778.3 + 107897 0.66 0.950759
Target:  5'- uGGGCuGCGCCGuuGCGGAaACGGUGc -3'
miRNA:   3'- -UUCGuCGCGGUggUGUUUgUGCUAUu -5'
21239 5' -52.2 NC_004778.3 + 88218 0.66 0.950759
Target:  5'- cGGC-GCgGCCGCCcguCAAACGCGAa-- -3'
miRNA:   3'- uUCGuCG-CGGUGGu--GUUUGUGCUauu -5'
21239 5' -52.2 NC_004778.3 + 103526 0.66 0.950759
Target:  5'- -cGcCAGCGCCACCA--AAgGCGAUc- -3'
miRNA:   3'- uuC-GUCGCGGUGGUguUUgUGCUAuu -5'
21239 5' -52.2 NC_004778.3 + 2142 0.66 0.946216
Target:  5'- uAGCuuGCGCCGCaGCGuGCACGAg-- -3'
miRNA:   3'- uUCGu-CGCGGUGgUGUuUGUGCUauu -5'
21239 5' -52.2 NC_004778.3 + 28856 0.66 0.941405
Target:  5'- -uGCAGCGCUGCaGCGAGCGCu---- -3'
miRNA:   3'- uuCGUCGCGGUGgUGUUUGUGcuauu -5'
21239 5' -52.2 NC_004778.3 + 36858 0.66 0.941405
Target:  5'- cGGCGGUGCgCGuCUugGCGAGCGCGGUGu -3'
miRNA:   3'- uUCGUCGCG-GU-GG--UGUUUGUGCUAUu -5'
21239 5' -52.2 NC_004778.3 + 80957 0.66 0.941405
Target:  5'- aAGGCAucGUGCaGCCGCAAACACGc--- -3'
miRNA:   3'- -UUCGU--CGCGgUGGUGUUUGUGCuauu -5'
21239 5' -52.2 NC_004778.3 + 97320 0.67 0.938389
Target:  5'- aGAGCAGCGCCaacgcccagcaaugcACCAaguuCGCGAUc- -3'
miRNA:   3'- -UUCGUCGCGG---------------UGGUguuuGUGCUAuu -5'
21239 5' -52.2 NC_004778.3 + 60688 0.67 0.938389
Target:  5'- -cGCGGCGCCAUCGuauuuugcauaaugcUggGCACGGg-- -3'
miRNA:   3'- uuCGUCGCGGUGGU---------------GuuUGUGCUauu -5'
21239 5' -52.2 NC_004778.3 + 85289 0.67 0.936324
Target:  5'- -uGCcGuCGCCGCCGCAAACGCc---- -3'
miRNA:   3'- uuCGuC-GCGGUGGUGUUUGUGcuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.