miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21240	3'	-54	NC_004778.3	+	100272	0.66	0.94207
	Target:  5'- aGCuGUGCcUGUGAAAUAGuUGUCaCCGUc -3' miRNA:   3'- aUG-CACGcGCACUUUGUC-ACAG-GGCA- -5'
21240	3'	-54	NC_004778.3	+	7484	0.66	0.92114
	Target:  5'- -uUGUGCGC-UGGGAC-GUGUUCCGc -3' miRNA:   3'- auGCACGCGcACUUUGuCACAGGGCa -5'
21240	3'	-54	NC_004778.3	+	33272	0.67	0.915274
	Target:  5'- aGCG-GCGCGUGGAagaggucguugcACAGUcgGUCgCCGa -3' miRNA:   3'- aUGCaCGCGCACUU------------UGUCA--CAG-GGCa -5'
21240	3'	-54	NC_004778.3	+	91335	0.67	0.909156
	Target:  5'- -cCGUGCGCGUGAAcGCgAGcG-CCCGa -3' miRNA:   3'- auGCACGCGCACUU-UG-UCaCaGGGCa -5'
21240	3'	-54	NC_004778.3	+	45712	0.69	0.817452
	Target:  5'- cUACGUGCGCGUuaacGAcuuGCAGUGgaUUCCGc -3' miRNA:   3'- -AUGCACGCGCA----CUu--UGUCAC--AGGGCa -5'
21240	3'	-54	NC_004778.3	+	37999	0.69	0.799316
	Target:  5'- cGCGUGCGCGUcGAuaAGCAccacgcGUGUCgCCGc -3' miRNA:   3'- aUGCACGCGCA-CU--UUGU------CACAG-GGCa -5'
21240	3'	-54	NC_004778.3	+	48941	0.71	0.710896
	Target:  5'- gACGUGgGCGUGGgaGACGGUGgCgCCGa -3' miRNA:   3'- aUGCACgCGCACU--UUGUCACaG-GGCa -5'
21240	3'	-54	NC_004778.3	+	80303	1.05	0.006171
	Target:  5'- uUACGUGCGCGUGAAACAGUGUCCCGUc -3' miRNA:   3'- -AUGCACGCGCACUUUGUCACAGGGCA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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