miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21240 5' -54.6 NC_004778.3 + 80519 0.66 0.93074
Target:  5'- aGACUcuccGGCuGCGUUcGCUGCGACgaCAGAc -3'
miRNA:   3'- gCUGA----CCGuCGCAA-UGGUGCUG--GUCU- -5'
21240 5' -54.6 NC_004778.3 + 75285 0.66 0.93074
Target:  5'- cCGGC-GGCcaaCGUUgacaacGCCAUGGCCAGAu -3'
miRNA:   3'- -GCUGaCCGuc-GCAA------UGGUGCUGGUCU- -5'
21240 5' -54.6 NC_004778.3 + 61812 0.66 0.930215
Target:  5'- gCGGCUGGCccagcaugcgcgcGGCGUUGgCGCGcGCUGGc -3'
miRNA:   3'- -GCUGACCG-------------UCGCAAUgGUGC-UGGUCu -5'
21240 5' -54.6 NC_004778.3 + 83249 0.66 0.925382
Target:  5'- gCGAUUGGCuGCGUUGuuGCaGACgcgCGGAa -3'
miRNA:   3'- -GCUGACCGuCGCAAUggUG-CUG---GUCU- -5'
21240 5' -54.6 NC_004778.3 + 96735 0.66 0.925382
Target:  5'- uGGCUaGCAGgGUgcuCCACGACCc-- -3'
miRNA:   3'- gCUGAcCGUCgCAau-GGUGCUGGucu -5'
21240 5' -54.6 NC_004778.3 + 59840 0.66 0.919777
Target:  5'- uGACUgGGCAG-GUcguCCGCGGCCGa- -3'
miRNA:   3'- gCUGA-CCGUCgCAau-GGUGCUGGUcu -5'
21240 5' -54.6 NC_004778.3 + 70266 0.67 0.907827
Target:  5'- -aACUGGaCGGCGUgcgcgGCCGCGGCa--- -3'
miRNA:   3'- gcUGACC-GUCGCAa----UGGUGCUGgucu -5'
21240 5' -54.6 NC_004778.3 + 69788 0.67 0.907827
Target:  5'- cCGAgaGGCGGCcgUGCCucGCGACCGc- -3'
miRNA:   3'- -GCUgaCCGUCGcaAUGG--UGCUGGUcu -5'
21240 5' -54.6 NC_004778.3 + 121583 0.67 0.907827
Target:  5'- cCGAC-GGCGGCGa---CACGGCCGa- -3'
miRNA:   3'- -GCUGaCCGUCGCaaugGUGCUGGUcu -5'
21240 5' -54.6 NC_004778.3 + 73720 0.67 0.894904
Target:  5'- cCGugUGuuCGGCGUcACCACGguguaGCCGGAu -3'
miRNA:   3'- -GCugACc-GUCGCAaUGGUGC-----UGGUCU- -5'
21240 5' -54.6 NC_004778.3 + 45698 0.67 0.873748
Target:  5'- aCGACUuGCAGUGgauuCCGCGACgGGc -3'
miRNA:   3'- -GCUGAcCGUCGCaau-GGUGCUGgUCu -5'
21240 5' -54.6 NC_004778.3 + 39260 0.68 0.858518
Target:  5'- gGugU-GCAGUGUUcACCACGGUCAGAa -3'
miRNA:   3'- gCugAcCGUCGCAA-UGGUGCUGGUCU- -5'
21240 5' -54.6 NC_004778.3 + 95020 0.69 0.825573
Target:  5'- cCGACgGGCAG-GUgcGCCugGACCAc- -3'
miRNA:   3'- -GCUGaCCGUCgCAa-UGGugCUGGUcu -5'
21240 5' -54.6 NC_004778.3 + 30569 0.69 0.820368
Target:  5'- cCGAguUUGGCAGCGUgcACCgauccaagagcacguACGGCCAGu -3'
miRNA:   3'- -GCU--GACCGUCGCAa-UGG---------------UGCUGGUCu -5'
21240 5' -54.6 NC_004778.3 + 120957 0.69 0.798928
Target:  5'- uGACUGGCggGGCGcggGCCGCGcCCGc- -3'
miRNA:   3'- gCUGACCG--UCGCaa-UGGUGCuGGUcu -5'
21240 5' -54.6 NC_004778.3 + 124345 0.69 0.789722
Target:  5'- aGAaaGGCGGCG--ACCGCGAagaCCGGAc -3'
miRNA:   3'- gCUgaCCGUCGCaaUGGUGCU---GGUCU- -5'
21240 5' -54.6 NC_004778.3 + 98716 0.7 0.770879
Target:  5'- uCGA-UGGCAGCcg-GCCGCGGCCGc- -3'
miRNA:   3'- -GCUgACCGUCGcaaUGGUGCUGGUcu -5'
21240 5' -54.6 NC_004778.3 + 17277 0.7 0.770879
Target:  5'- -cGCUGGCaacGGCGUUGCCACGGuaGGc -3'
miRNA:   3'- gcUGACCG---UCGCAAUGGUGCUggUCu -5'
21240 5' -54.6 NC_004778.3 + 114267 0.71 0.715641
Target:  5'- aGGCUGGCGGagauGUcguucaacuugucgcUGCCGCGACCGa- -3'
miRNA:   3'- gCUGACCGUCg---CA---------------AUGGUGCUGGUcu -5'
21240 5' -54.6 NC_004778.3 + 36843 0.71 0.691159
Target:  5'- uGGCgagcGCGGUGUUGcCCACGGCCGGc -3'
miRNA:   3'- gCUGac--CGUCGCAAU-GGUGCUGGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.