miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21241 5' -55.8 NC_004778.3 + 81129 0.65 0.891757
Target:  5'- --uGCGAGCacCGGCCAccuguuucacucgcUGUACGCGUucguGCc -3'
miRNA:   3'- ucgUGUUCG--GCCGGU--------------ACAUGCGCA----CG- -5'
21241 5' -55.8 NC_004778.3 + 73671 0.66 0.886927
Target:  5'- uGCGCc-GCCGaauuGCgCGUGUACacgaGCGUGCa -3'
miRNA:   3'- uCGUGuuCGGC----CG-GUACAUG----CGCACG- -5'
21241 5' -55.8 NC_004778.3 + 25658 0.66 0.886927
Target:  5'- cGCGgGGGCCGGCg----GCGUGUGg -3'
miRNA:   3'- uCGUgUUCGGCCGguacaUGCGCACg -5'
21241 5' -55.8 NC_004778.3 + 56928 0.66 0.884116
Target:  5'- uGGCGCAAaCUGGCCGagauagacaaacgGUucaACGUGUGCc -3'
miRNA:   3'- -UCGUGUUcGGCCGGUa------------CA---UGCGCACG- -5'
21241 5' -55.8 NC_004778.3 + 28101 0.66 0.87983
Target:  5'- uGCACGAGC--GCCAuuuUGUgauACGCGUcGCg -3'
miRNA:   3'- uCGUGUUCGgcCGGU---ACA---UGCGCA-CG- -5'
21241 5' -55.8 NC_004778.3 + 63978 0.66 0.87983
Target:  5'- gAGCAaaacCAcGCCGGaCAUuguugucaaaGUGCGCGUGUu -3'
miRNA:   3'- -UCGU----GUuCGGCCgGUA----------CAUGCGCACG- -5'
21241 5' -55.8 NC_004778.3 + 118481 0.66 0.87983
Target:  5'- uGCACucuguGCgGGCaCAUGUaguAUGCGUuGCa -3'
miRNA:   3'- uCGUGuu---CGgCCG-GUACA---UGCGCA-CG- -5'
21241 5' -55.8 NC_004778.3 + 34917 0.66 0.87983
Target:  5'- -cCGCAAGCgcaUGGCauUGUGCGCGgcgGCg -3'
miRNA:   3'- ucGUGUUCG---GCCGguACAUGCGCa--CG- -5'
21241 5' -55.8 NC_004778.3 + 74967 0.66 0.879108
Target:  5'- gGGCGCAAGgCGGU---GUACuugccggGCGUGCc -3'
miRNA:   3'- -UCGUGUUCgGCCGguaCAUG-------CGCACG- -5'
21241 5' -55.8 NC_004778.3 + 5085 0.66 0.872505
Target:  5'- cGGCgACAAaaCCGGUC-UGUGCGCGaacgUGCa -3'
miRNA:   3'- -UCG-UGUUc-GGCCGGuACAUGCGC----ACG- -5'
21241 5' -55.8 NC_004778.3 + 60510 0.66 0.864956
Target:  5'- cGCugGAGCUGGCgCGcGaaaucUACGCGcGCa -3'
miRNA:   3'- uCGugUUCGGCCG-GUaC-----AUGCGCaCG- -5'
21241 5' -55.8 NC_004778.3 + 83245 0.66 0.864956
Target:  5'- cGCGCAAGCUGGUCGaGU-CGCuacagGCc -3'
miRNA:   3'- uCGUGUUCGGCCGGUaCAuGCGca---CG- -5'
21241 5' -55.8 NC_004778.3 + 121713 0.66 0.864956
Target:  5'- gGGCGCcaaaacGGCCGG-CGUGgGCGUGUuGCu -3'
miRNA:   3'- -UCGUGu-----UCGGCCgGUACaUGCGCA-CG- -5'
21241 5' -55.8 NC_004778.3 + 34040 0.66 0.864956
Target:  5'- cGUACAugucccaguGCCGGUUGUGgaUGgGCGUGCc -3'
miRNA:   3'- uCGUGUu--------CGGCCGGUAC--AUgCGCACG- -5'
21241 5' -55.8 NC_004778.3 + 36674 0.66 0.864956
Target:  5'- cGCAgucguuUAGGCCGGCCGUGggcaacacCGCGcucGCc -3'
miRNA:   3'- uCGU------GUUCGGCCGGUACau------GCGCa--CG- -5'
21241 5' -55.8 NC_004778.3 + 96526 0.66 0.864956
Target:  5'- gGGCGCAAaaugggagcGCCuGCCAaGUGaccaGUGUGCu -3'
miRNA:   3'- -UCGUGUU---------CGGcCGGUaCAUg---CGCACG- -5'
21241 5' -55.8 NC_004778.3 + 121592 0.66 0.862649
Target:  5'- uGCGCGGcGCCgacggcggcgacacGGCCG---ACGCGUGCc -3'
miRNA:   3'- uCGUGUU-CGG--------------CCGGUacaUGCGCACG- -5'
21241 5' -55.8 NC_004778.3 + 106179 0.66 0.862649
Target:  5'- aAGUACAugguggacaucuacGGCgCGGCgGUGUugGCuuUGCg -3'
miRNA:   3'- -UCGUGU--------------UCG-GCCGgUACAugCGc-ACG- -5'
21241 5' -55.8 NC_004778.3 + 88676 0.66 0.8611
Target:  5'- uGGCGCAAuuggacgggaugucGCCGcGCagcaagcgGCGCGUGCg -3'
miRNA:   3'- -UCGUGUU--------------CGGC-CGguaca---UGCGCACG- -5'
21241 5' -55.8 NC_004778.3 + 89896 0.66 0.85719
Target:  5'- gGGCGCAAG-CGGCU-UGcGCGCGuUGUu -3'
miRNA:   3'- -UCGUGUUCgGCCGGuACaUGCGC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.