miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21242 5' -59.9 NC_004778.3 + 53101 0.66 0.741521
Target:  5'- cGCCGCCGCagcaaCCG--CCGCCAca-GCa -3'
miRNA:   3'- -CGGCGGCGag---GGCuaGGCGGUuacCG- -5'
21242 5' -59.9 NC_004778.3 + 118270 0.66 0.741521
Target:  5'- cGCCGCCGCcgaUUuuGucaaacUCC-UCGAUGGCg -3'
miRNA:   3'- -CGGCGGCG---AGggCu-----AGGcGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 95145 0.66 0.731959
Target:  5'- gGCCGUuUGUUCCaccacaCGA-CCGCCGAcGGCg -3'
miRNA:   3'- -CGGCG-GCGAGG------GCUaGGCGGUUaCCG- -5'
21242 5' -59.9 NC_004778.3 + 33223 0.66 0.731959
Target:  5'- gGCCGCUGCa-CCGuUgCGCCA--GGCu -3'
miRNA:   3'- -CGGCGGCGagGGCuAgGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 97417 0.66 0.722314
Target:  5'- aGCCGCCGgUUCUaAUCUGCagcgagugcaAAUGGUg -3'
miRNA:   3'- -CGGCGGCgAGGGcUAGGCGg---------UUACCG- -5'
21242 5' -59.9 NC_004778.3 + 62179 0.66 0.719406
Target:  5'- uGgCGCCGCUCUCGGcgUCCGCagacaucuuCAAuuacaugucccaauUGGCc -3'
miRNA:   3'- -CgGCGGCGAGGGCU--AGGCG---------GUU--------------ACCG- -5'
21242 5' -59.9 NC_004778.3 + 35824 0.66 0.712595
Target:  5'- cGgCGCCGCaCCaacaaGcgCCuuggggGCCAGUGGCg -3'
miRNA:   3'- -CgGCGGCGaGGg----CuaGG------CGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 21667 0.66 0.712595
Target:  5'- uGCCGCUuaGgUUUCGG-CCGgCGGUGGCg -3'
miRNA:   3'- -CGGCGG--CgAGGGCUaGGCgGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 97555 0.66 0.702811
Target:  5'- aCCgGCgGCUUCCuugcGcgCCGCCAcacgAUGGCg -3'
miRNA:   3'- cGG-CGgCGAGGG----CuaGGCGGU----UACCG- -5'
21242 5' -59.9 NC_004778.3 + 46380 0.66 0.702811
Target:  5'- aGgCGCCGUUCgCgCGAcuugcUCUGCCAcucuuUGGCg -3'
miRNA:   3'- -CgGCGGCGAG-G-GCU-----AGGCGGUu----ACCG- -5'
21242 5' -59.9 NC_004778.3 + 11996 0.66 0.702811
Target:  5'- gGCagGCCGCUgCCGcgCCGCCGc---- -3'
miRNA:   3'- -CGg-CGGCGAgGGCuaGGCGGUuaccg -5'
21242 5' -59.9 NC_004778.3 + 57291 0.66 0.69297
Target:  5'- uGUCGagcaCGuCUCCCGuUCCGUCGG-GGCc -3'
miRNA:   3'- -CGGCg---GC-GAGGGCuAGGCGGUUaCCG- -5'
21242 5' -59.9 NC_004778.3 + 118885 0.66 0.69297
Target:  5'- cGCCGCCGCg-CCGAg--GCCAAgcGCa -3'
miRNA:   3'- -CGGCGGCGagGGCUaggCGGUUacCG- -5'
21242 5' -59.9 NC_004778.3 + 70066 0.67 0.68308
Target:  5'- uGCCGCgGUagauucauaCCGGUCCGCUg--GGCc -3'
miRNA:   3'- -CGGCGgCGag-------GGCUAGGCGGuuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 12741 0.67 0.68308
Target:  5'- -gUGCCGCg-CCGAuUCCGCUGucgGGCg -3'
miRNA:   3'- cgGCGGCGagGGCU-AGGCGGUua-CCG- -5'
21242 5' -59.9 NC_004778.3 + 32222 0.67 0.673149
Target:  5'- cGCCGCacguGCUCCUGAUuuGCguaGAUGa- -3'
miRNA:   3'- -CGGCGg---CGAGGGCUAggCGg--UUACcg -5'
21242 5' -59.9 NC_004778.3 + 45222 0.67 0.663187
Target:  5'- -aCGCCGCUCgCG---CGCUGAUGGUa -3'
miRNA:   3'- cgGCGGCGAGgGCuagGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 70566 0.67 0.660193
Target:  5'- gGCCGCaguucggcgagcuaCGUUUCCagcaauuuuucGAUCCGCCGuUGGUg -3'
miRNA:   3'- -CGGCG--------------GCGAGGG-----------CUAGGCGGUuACCG- -5'
21242 5' -59.9 NC_004778.3 + 5221 0.67 0.653201
Target:  5'- uGUCGCCGCgguuauaCCacgCCGCCAGUcgcgcGGCg -3'
miRNA:   3'- -CGGCGGCGag-----GGcuaGGCGGUUA-----CCG- -5'
21242 5' -59.9 NC_004778.3 + 118973 0.67 0.647201
Target:  5'- gGgCGCCGUUCCCGcgcccgauuuaaAUaaauaaacgauaacgCCGUUAGUGGCg -3'
miRNA:   3'- -CgGCGGCGAGGGC------------UA---------------GGCGGUUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.