Results 41 - 52 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 53101 | 0.66 | 0.741521 |
Target: 5'- cGCCGCCGCagcaaCCG--CCGCCAca-GCa -3' miRNA: 3'- -CGGCGGCGag---GGCuaGGCGGUuacCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 118270 | 0.66 | 0.741521 |
Target: 5'- cGCCGCCGCcgaUUuuGucaaacUCC-UCGAUGGCg -3' miRNA: 3'- -CGGCGGCG---AGggCu-----AGGcGGUUACCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 33223 | 0.66 | 0.731959 |
Target: 5'- gGCCGCUGCa-CCGuUgCGCCA--GGCu -3' miRNA: 3'- -CGGCGGCGagGGCuAgGCGGUuaCCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 62179 | 0.66 | 0.719406 |
Target: 5'- uGgCGCCGCUCUCGGcgUCCGCagacaucuuCAAuuacaugucccaauUGGCc -3' miRNA: 3'- -CgGCGGCGAGGGCU--AGGCG---------GUU--------------ACCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 21667 | 0.66 | 0.712595 |
Target: 5'- uGCCGCUuaGgUUUCGG-CCGgCGGUGGCg -3' miRNA: 3'- -CGGCGG--CgAGGGCUaGGCgGUUACCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 97417 | 0.66 | 0.722314 |
Target: 5'- aGCCGCCGgUUCUaAUCUGCagcgagugcaAAUGGUg -3' miRNA: 3'- -CGGCGGCgAGGGcUAGGCGg---------UUACCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 57291 | 0.66 | 0.69297 |
Target: 5'- uGUCGagcaCGuCUCCCGuUCCGUCGG-GGCc -3' miRNA: 3'- -CGGCg---GC-GAGGGCuAGGCGGUUaCCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 118885 | 0.66 | 0.69297 |
Target: 5'- cGCCGCCGCg-CCGAg--GCCAAgcGCa -3' miRNA: 3'- -CGGCGGCGagGGCUaggCGGUUacCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 11996 | 0.66 | 0.702811 |
Target: 5'- gGCagGCCGCUgCCGcgCCGCCGc---- -3' miRNA: 3'- -CGg-CGGCGAgGGCuaGGCGGUuaccg -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 46380 | 0.66 | 0.702811 |
Target: 5'- aGgCGCCGUUCgCgCGAcuugcUCUGCCAcucuuUGGCg -3' miRNA: 3'- -CgGCGGCGAG-G-GCU-----AGGCGGUu----ACCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 35824 | 0.66 | 0.712595 |
Target: 5'- cGgCGCCGCaCCaacaaGcgCCuuggggGCCAGUGGCg -3' miRNA: 3'- -CgGCGGCGaGGg----CuaGG------CGGUUACCG- -5' |
|||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 95145 | 0.66 | 0.731959 |
Target: 5'- gGCCGUuUGUUCCaccacaCGA-CCGCCGAcGGCg -3' miRNA: 3'- -CGGCG-GCGAGG------GCUaGGCGGUUaCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home