Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21242 | 5' | -59.9 | NC_004778.3 | + | 81997 | 1.14 | 0.000548 |
Target: 5'- cGCCGCCGCUCCCGAUCCGCCAAUGGCg -3' miRNA: 3'- -CGGCGGCGAGGGCUAGGCGGUUACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 68456 | 0.78 | 0.157168 |
Target: 5'- cGCCGCCGC-CgCCGccgCCGCCGccGGCg -3' miRNA: 3'- -CGGCGGCGaG-GGCua-GGCGGUuaCCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 63653 | 0.76 | 0.221425 |
Target: 5'- cGCCGCCGCagcaugagCCCGaAUCCGCCcgcgccgaaGAaGGCg -3' miRNA: 3'- -CGGCGGCGa-------GGGC-UAGGCGG---------UUaCCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 69928 | 0.73 | 0.350376 |
Target: 5'- gGCCGCCucucgGUUCUCGcgCCacaCCAGUGGCa -3' miRNA: 3'- -CGGCGG-----CGAGGGCuaGGc--GGUUACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 10416 | 0.73 | 0.350376 |
Target: 5'- cGCCGCCGgUCCCG---CGCgCAAUcGGCg -3' miRNA: 3'- -CGGCGGCgAGGGCuagGCG-GUUA-CCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 10736 | 0.72 | 0.365865 |
Target: 5'- cGCUGCgCGCUCCgCGggCUGCCGuGUGcGCg -3' miRNA: 3'- -CGGCG-GCGAGG-GCuaGGCGGU-UAC-CG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 1128 | 0.72 | 0.389968 |
Target: 5'- gGCCGCUGCUgCgCCGAUCgaCGCCGAcgacggucaaUGGUc -3' miRNA: 3'- -CGGCGGCGA-G-GGCUAG--GCGGUU----------ACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 57478 | 0.72 | 0.389968 |
Target: 5'- aGCUGCCGCUgCCGcgCgacggaaaaGCCGAcaUGGCg -3' miRNA: 3'- -CGGCGGCGAgGGCuaGg--------CGGUU--ACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 114295 | 0.71 | 0.432374 |
Target: 5'- cGCUGCCGCgaCCGAUgCGUuugaUAAUGGCc -3' miRNA: 3'- -CGGCGGCGagGGCUAgGCG----GUUACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 32979 | 0.71 | 0.450074 |
Target: 5'- gGCCaGCCGCgUCCGAaacugguuuucgUCCGC-AAUGGCc -3' miRNA: 3'- -CGG-CGGCGaGGGCU------------AGGCGgUUACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 117178 | 0.7 | 0.459073 |
Target: 5'- cGUCGgUGUUCgUGGUCgUGCCGGUGGCg -3' miRNA: 3'- -CGGCgGCGAGgGCUAG-GCGGUUACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 19271 | 0.7 | 0.468166 |
Target: 5'- cGCCGCuCGCgcgCCCGAaccagcUuuGCCAAUuGGg -3' miRNA: 3'- -CGGCG-GCGa--GGGCU------AggCGGUUA-CCg -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 95400 | 0.7 | 0.48105 |
Target: 5'- cGCCGCgGCgcaccaugCCCGAgUCCGCggcgauuugguugaaCAcgGGCa -3' miRNA: 3'- -CGGCGgCGa-------GGGCU-AGGCG---------------GUuaCCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 64154 | 0.7 | 0.493166 |
Target: 5'- aGCgCGUCGCgCCCGuggCCGCCGagcuugacgcguucGUGGUg -3' miRNA: 3'- -CG-GCGGCGaGGGCua-GGCGGU--------------UACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 21295 | 0.7 | 0.495981 |
Target: 5'- -aCGgCGCUCCCGAcgCCGCagagcGGCa -3' miRNA: 3'- cgGCgGCGAGGGCUa-GGCGguua-CCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 25490 | 0.7 | 0.495981 |
Target: 5'- uGUCGCCGCgacaaaUGG-CCGCCAAUGGg -3' miRNA: 3'- -CGGCGGCGagg---GCUaGGCGGUUACCg -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 125682 | 0.7 | 0.50542 |
Target: 5'- aGCaGCCGUUCCUGAaCgGCC--UGGCg -3' miRNA: 3'- -CGgCGGCGAGGGCUaGgCGGuuACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 50760 | 0.7 | 0.50542 |
Target: 5'- aUCGuuGCUaaggccCUCGAUCaUGCCGAUGGCc -3' miRNA: 3'- cGGCggCGA------GGGCUAG-GCGGUUACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 90295 | 0.69 | 0.514934 |
Target: 5'- cGCUGCaCGCUCCaGAauaCCGCacguAUGGCg -3' miRNA: 3'- -CGGCG-GCGAGGgCUa--GGCGgu--UACCG- -5' |
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21242 | 5' | -59.9 | NC_004778.3 | + | 121395 | 0.69 | 0.543889 |
Target: 5'- cCCGCCGCagacCCCGAcUCGCCGcaguuuGUGGa -3' miRNA: 3'- cGGCGGCGa---GGGCUaGGCGGU------UACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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