miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21242 5' -59.9 NC_004778.3 + 81997 1.14 0.000548
Target:  5'- cGCCGCCGCUCCCGAUCCGCCAAUGGCg -3'
miRNA:   3'- -CGGCGGCGAGGGCUAGGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 68456 0.78 0.157168
Target:  5'- cGCCGCCGC-CgCCGccgCCGCCGccGGCg -3'
miRNA:   3'- -CGGCGGCGaG-GGCua-GGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 63653 0.76 0.221425
Target:  5'- cGCCGCCGCagcaugagCCCGaAUCCGCCcgcgccgaaGAaGGCg -3'
miRNA:   3'- -CGGCGGCGa-------GGGC-UAGGCGG---------UUaCCG- -5'
21242 5' -59.9 NC_004778.3 + 69928 0.73 0.350376
Target:  5'- gGCCGCCucucgGUUCUCGcgCCacaCCAGUGGCa -3'
miRNA:   3'- -CGGCGG-----CGAGGGCuaGGc--GGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 10416 0.73 0.350376
Target:  5'- cGCCGCCGgUCCCG---CGCgCAAUcGGCg -3'
miRNA:   3'- -CGGCGGCgAGGGCuagGCG-GUUA-CCG- -5'
21242 5' -59.9 NC_004778.3 + 10736 0.72 0.365865
Target:  5'- cGCUGCgCGCUCCgCGggCUGCCGuGUGcGCg -3'
miRNA:   3'- -CGGCG-GCGAGG-GCuaGGCGGU-UAC-CG- -5'
21242 5' -59.9 NC_004778.3 + 1128 0.72 0.389968
Target:  5'- gGCCGCUGCUgCgCCGAUCgaCGCCGAcgacggucaaUGGUc -3'
miRNA:   3'- -CGGCGGCGA-G-GGCUAG--GCGGUU----------ACCG- -5'
21242 5' -59.9 NC_004778.3 + 57478 0.72 0.389968
Target:  5'- aGCUGCCGCUgCCGcgCgacggaaaaGCCGAcaUGGCg -3'
miRNA:   3'- -CGGCGGCGAgGGCuaGg--------CGGUU--ACCG- -5'
21242 5' -59.9 NC_004778.3 + 114295 0.71 0.432374
Target:  5'- cGCUGCCGCgaCCGAUgCGUuugaUAAUGGCc -3'
miRNA:   3'- -CGGCGGCGagGGCUAgGCG----GUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 32979 0.71 0.450074
Target:  5'- gGCCaGCCGCgUCCGAaacugguuuucgUCCGC-AAUGGCc -3'
miRNA:   3'- -CGG-CGGCGaGGGCU------------AGGCGgUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 117178 0.7 0.459073
Target:  5'- cGUCGgUGUUCgUGGUCgUGCCGGUGGCg -3'
miRNA:   3'- -CGGCgGCGAGgGCUAG-GCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 19271 0.7 0.468166
Target:  5'- cGCCGCuCGCgcgCCCGAaccagcUuuGCCAAUuGGg -3'
miRNA:   3'- -CGGCG-GCGa--GGGCU------AggCGGUUA-CCg -5'
21242 5' -59.9 NC_004778.3 + 95400 0.7 0.48105
Target:  5'- cGCCGCgGCgcaccaugCCCGAgUCCGCggcgauuugguugaaCAcgGGCa -3'
miRNA:   3'- -CGGCGgCGa-------GGGCU-AGGCG---------------GUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 64154 0.7 0.493166
Target:  5'- aGCgCGUCGCgCCCGuggCCGCCGagcuugacgcguucGUGGUg -3'
miRNA:   3'- -CG-GCGGCGaGGGCua-GGCGGU--------------UACCG- -5'
21242 5' -59.9 NC_004778.3 + 21295 0.7 0.495981
Target:  5'- -aCGgCGCUCCCGAcgCCGCagagcGGCa -3'
miRNA:   3'- cgGCgGCGAGGGCUa-GGCGguua-CCG- -5'
21242 5' -59.9 NC_004778.3 + 25490 0.7 0.495981
Target:  5'- uGUCGCCGCgacaaaUGG-CCGCCAAUGGg -3'
miRNA:   3'- -CGGCGGCGagg---GCUaGGCGGUUACCg -5'
21242 5' -59.9 NC_004778.3 + 125682 0.7 0.50542
Target:  5'- aGCaGCCGUUCCUGAaCgGCC--UGGCg -3'
miRNA:   3'- -CGgCGGCGAGGGCUaGgCGGuuACCG- -5'
21242 5' -59.9 NC_004778.3 + 50760 0.7 0.50542
Target:  5'- aUCGuuGCUaaggccCUCGAUCaUGCCGAUGGCc -3'
miRNA:   3'- cGGCggCGA------GGGCUAG-GCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 90295 0.69 0.514934
Target:  5'- cGCUGCaCGCUCCaGAauaCCGCacguAUGGCg -3'
miRNA:   3'- -CGGCG-GCGAGGgCUa--GGCGgu--UACCG- -5'
21242 5' -59.9 NC_004778.3 + 121395 0.69 0.543889
Target:  5'- cCCGCCGCagacCCCGAcUCGCCGcaguuuGUGGa -3'
miRNA:   3'- cGGCGGCGa---GGGCUaGGCGGU------UACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.