miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21242 5' -59.9 NC_004778.3 + 207 0.69 0.563486
Target:  5'- aGCCGCCGC-CUUuuUUCGCCA--GGCu -3'
miRNA:   3'- -CGGCGGCGaGGGcuAGGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 1128 0.72 0.389968
Target:  5'- gGCCGCUGCUgCgCCGAUCgaCGCCGAcgacggucaaUGGUc -3'
miRNA:   3'- -CGGCGGCGA-G-GGCUAG--GCGGUU----------ACCG- -5'
21242 5' -59.9 NC_004778.3 + 5221 0.67 0.653201
Target:  5'- uGUCGCCGCgguuauaCCacgCCGCCAGUcgcgcGGCg -3'
miRNA:   3'- -CGGCGGCGag-----GGcuaGGCGGUUA-----CCG- -5'
21242 5' -59.9 NC_004778.3 + 10416 0.73 0.350376
Target:  5'- cGCCGCCGgUCCCG---CGCgCAAUcGGCg -3'
miRNA:   3'- -CGGCGGCgAGGGCuagGCG-GUUA-CCG- -5'
21242 5' -59.9 NC_004778.3 + 10736 0.72 0.365865
Target:  5'- cGCUGCgCGCUCCgCGggCUGCCGuGUGcGCg -3'
miRNA:   3'- -CGGCG-GCGAGG-GCuaGGCGGU-UAC-CG- -5'
21242 5' -59.9 NC_004778.3 + 11996 0.66 0.702811
Target:  5'- gGCagGCCGCUgCCGcgCCGCCGc---- -3'
miRNA:   3'- -CGg-CGGCGAgGGCuaGGCGGUuaccg -5'
21242 5' -59.9 NC_004778.3 + 12741 0.67 0.68308
Target:  5'- -gUGCCGCg-CCGAuUCCGCUGucgGGCg -3'
miRNA:   3'- cgGCGGCGagGGCU-AGGCGGUua-CCG- -5'
21242 5' -59.9 NC_004778.3 + 19271 0.7 0.468166
Target:  5'- cGCCGCuCGCgcgCCCGAaccagcUuuGCCAAUuGGg -3'
miRNA:   3'- -CGGCG-GCGa--GGGCU------AggCGGUUA-CCg -5'
21242 5' -59.9 NC_004778.3 + 21295 0.7 0.495981
Target:  5'- -aCGgCGCUCCCGAcgCCGCagagcGGCa -3'
miRNA:   3'- cgGCgGCGAGGGCUa-GGCGguua-CCG- -5'
21242 5' -59.9 NC_004778.3 + 21667 0.66 0.712595
Target:  5'- uGCCGCUuaGgUUUCGG-CCGgCGGUGGCg -3'
miRNA:   3'- -CGGCGG--CgAGGGCUaGGCgGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 25490 0.7 0.495981
Target:  5'- uGUCGCCGCgacaaaUGG-CCGCCAAUGGg -3'
miRNA:   3'- -CGGCGGCGagg---GCUaGGCGGUUACCg -5'
21242 5' -59.9 NC_004778.3 + 32222 0.67 0.673149
Target:  5'- cGCCGCacguGCUCCUGAUuuGCguaGAUGa- -3'
miRNA:   3'- -CGGCGg---CGAGGGCUAggCGg--UUACcg -5'
21242 5' -59.9 NC_004778.3 + 32979 0.71 0.450074
Target:  5'- gGCCaGCCGCgUCCGAaacugguuuucgUCCGC-AAUGGCc -3'
miRNA:   3'- -CGG-CGGCGaGGGCU------------AGGCGgUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 33223 0.66 0.731959
Target:  5'- gGCCGCUGCa-CCGuUgCGCCA--GGCu -3'
miRNA:   3'- -CGGCGGCGagGGCuAgGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 35824 0.66 0.712595
Target:  5'- cGgCGCCGCaCCaacaaGcgCCuuggggGCCAGUGGCg -3'
miRNA:   3'- -CgGCGGCGaGGg----CuaGG------CGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 35943 0.69 0.563486
Target:  5'- aGCCGCCGaa-CUGAcUCGCUAcUGGCu -3'
miRNA:   3'- -CGGCGGCgagGGCUaGGCGGUuACCG- -5'
21242 5' -59.9 NC_004778.3 + 45222 0.67 0.663187
Target:  5'- -aCGCCGCUCgCG---CGCUGAUGGUa -3'
miRNA:   3'- cgGCGGCGAGgGCuagGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 46380 0.66 0.702811
Target:  5'- aGgCGCCGUUCgCgCGAcuugcUCUGCCAcucuuUGGCg -3'
miRNA:   3'- -CgGCGGCGAG-G-GCU-----AGGCGGUu----ACCG- -5'
21242 5' -59.9 NC_004778.3 + 50760 0.7 0.50542
Target:  5'- aUCGuuGCUaaggccCUCGAUCaUGCCGAUGGCc -3'
miRNA:   3'- cGGCggCGA------GGGCUAG-GCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 53101 0.66 0.741521
Target:  5'- cGCCGCCGCagcaaCCG--CCGCCAca-GCa -3'
miRNA:   3'- -CGGCGGCGag---GGCuaGGCGGUuacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.