miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21242 5' -59.9 NC_004778.3 + 125682 0.7 0.50542
Target:  5'- aGCaGCCGUUCCUGAaCgGCC--UGGCg -3'
miRNA:   3'- -CGgCGGCGAGGGCUaGgCGGuuACCG- -5'
21242 5' -59.9 NC_004778.3 + 121395 0.69 0.543889
Target:  5'- cCCGCCGCagacCCCGAcUCGCCGcaguuuGUGGa -3'
miRNA:   3'- cGGCGGCGa---GGGCUaGGCGGU------UACCg -5'
21242 5' -59.9 NC_004778.3 + 118973 0.67 0.647201
Target:  5'- gGgCGCCGUUCCCGcgcccgauuuaaAUaaauaaacgauaacgCCGUUAGUGGCg -3'
miRNA:   3'- -CgGCGGCGAGGGC------------UA---------------GGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 118885 0.66 0.69297
Target:  5'- cGCCGCCGCg-CCGAg--GCCAAgcGCa -3'
miRNA:   3'- -CGGCGGCGagGGCUaggCGGUUacCG- -5'
21242 5' -59.9 NC_004778.3 + 118270 0.66 0.741521
Target:  5'- cGCCGCCGCcgaUUuuGucaaacUCC-UCGAUGGCg -3'
miRNA:   3'- -CGGCGGCG---AGggCu-----AGGcGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 117178 0.7 0.459073
Target:  5'- cGUCGgUGUUCgUGGUCgUGCCGGUGGCg -3'
miRNA:   3'- -CGGCgGCGAGgGCUAG-GCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 114295 0.71 0.432374
Target:  5'- cGCUGCCGCgaCCGAUgCGUuugaUAAUGGCc -3'
miRNA:   3'- -CGGCGGCGagGGCUAgGCG----GUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 111956 0.68 0.583266
Target:  5'- aGCCGCCGUUCaugaGAUCgCGgCCAAagcgucGGCa -3'
miRNA:   3'- -CGGCGGCGAGgg--CUAG-GC-GGUUa-----CCG- -5'
21242 5' -59.9 NC_004778.3 + 110238 0.68 0.60318
Target:  5'- cGCCGUuuugaacaaaCGCgugCCCGGaaaccuggUCCGCC--UGGCg -3'
miRNA:   3'- -CGGCG----------GCGa--GGGCU--------AGGCGGuuACCG- -5'
21242 5' -59.9 NC_004778.3 + 108417 0.67 0.633188
Target:  5'- uGCCGCgGCgcagguggacgCgCUGGUgCGCCGcgGGCu -3'
miRNA:   3'- -CGGCGgCGa----------G-GGCUAgGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 97555 0.66 0.702811
Target:  5'- aCCgGCgGCUUCCuugcGcgCCGCCAcacgAUGGCg -3'
miRNA:   3'- cGG-CGgCGAGGG----CuaGGCGGU----UACCG- -5'
21242 5' -59.9 NC_004778.3 + 97417 0.66 0.722314
Target:  5'- aGCCGCCGgUUCUaAUCUGCagcgagugcaAAUGGUg -3'
miRNA:   3'- -CGGCGGCgAGGGcUAGGCGg---------UUACCG- -5'
21242 5' -59.9 NC_004778.3 + 95918 0.68 0.60318
Target:  5'- cGCUGCCGCgcggauagcgCCCGGcgCgGCUccaaaucuuGAUGGCg -3'
miRNA:   3'- -CGGCGGCGa---------GGGCUa-GgCGG---------UUACCG- -5'
21242 5' -59.9 NC_004778.3 + 95400 0.7 0.48105
Target:  5'- cGCCGCgGCgcaccaugCCCGAgUCCGCggcgauuugguugaaCAcgGGCa -3'
miRNA:   3'- -CGGCGgCGa-------GGGCU-AGGCG---------------GUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 95145 0.66 0.731959
Target:  5'- gGCCGUuUGUUCCaccacaCGA-CCGCCGAcGGCg -3'
miRNA:   3'- -CGGCG-GCGAGG------GCUaGGCGGUUaCCG- -5'
21242 5' -59.9 NC_004778.3 + 90295 0.69 0.514934
Target:  5'- cGCUGCaCGCUCCaGAauaCCGCacguAUGGCg -3'
miRNA:   3'- -CGGCG-GCGAGGgCUa--GGCGgu--UACCG- -5'
21242 5' -59.9 NC_004778.3 + 85355 0.68 0.604178
Target:  5'- cGCCGCCGCaaacgCCCGcguccaugacaucgCCGCCGcaaacgcccgcGUGGg -3'
miRNA:   3'- -CGGCGGCGa----GGGCua------------GGCGGU-----------UACCg -5'
21242 5' -59.9 NC_004778.3 + 85295 0.68 0.60318
Target:  5'- cGCCGCCGCaaacgCCCGcGUCCauGCCGuc-GCc -3'
miRNA:   3'- -CGGCGGCGa----GGGC-UAGG--CGGUuacCG- -5'
21242 5' -59.9 NC_004778.3 + 83422 0.68 0.593209
Target:  5'- aGCCGCCGCg-CCGuUCCGCgCGucuGCa -3'
miRNA:   3'- -CGGCGGCGagGGCuAGGCG-GUuacCG- -5'
21242 5' -59.9 NC_004778.3 + 82751 0.68 0.60318
Target:  5'- cCCGCCGCgaaUUCCGA--CGCCGAagcGGCg -3'
miRNA:   3'- cGGCGGCG---AGGGCUagGCGGUUa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.