miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21242 5' -59.9 NC_004778.3 + 81997 1.14 0.000548
Target:  5'- cGCCGCCGCUCCCGAUCCGCCAAUGGCg -3'
miRNA:   3'- -CGGCGGCGAGGGCUAGGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 81961 0.68 0.593209
Target:  5'- cGCCGCCGCaggagUUCUGGUuacagacgCCGCCcc-GGCa -3'
miRNA:   3'- -CGGCGGCG-----AGGGCUA--------GGCGGuuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 70566 0.67 0.660193
Target:  5'- gGCCGCaguucggcgagcuaCGUUUCCagcaauuuuucGAUCCGCCGuUGGUg -3'
miRNA:   3'- -CGGCG--------------GCGAGGG-----------CUAGGCGGUuACCG- -5'
21242 5' -59.9 NC_004778.3 + 70066 0.67 0.68308
Target:  5'- uGCCGCgGUagauucauaCCGGUCCGCUg--GGCc -3'
miRNA:   3'- -CGGCGgCGag-------GGCUAGGCGGuuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 69928 0.73 0.350376
Target:  5'- gGCCGCCucucgGUUCUCGcgCCacaCCAGUGGCa -3'
miRNA:   3'- -CGGCGG-----CGAGGGCuaGGc--GGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 68456 0.78 0.157168
Target:  5'- cGCCGCCGC-CgCCGccgCCGCCGccGGCg -3'
miRNA:   3'- -CGGCGGCGaG-GGCua-GGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 64154 0.7 0.493166
Target:  5'- aGCgCGUCGCgCCCGuggCCGCCGagcuugacgcguucGUGGUg -3'
miRNA:   3'- -CG-GCGGCGaGGGCua-GGCGGU--------------UACCG- -5'
21242 5' -59.9 NC_004778.3 + 63653 0.76 0.221425
Target:  5'- cGCCGCCGCagcaugagCCCGaAUCCGCCcgcgccgaaGAaGGCg -3'
miRNA:   3'- -CGGCGGCGa-------GGGC-UAGGCGG---------UUaCCG- -5'
21242 5' -59.9 NC_004778.3 + 62179 0.66 0.719406
Target:  5'- uGgCGCCGCUCUCGGcgUCCGCagacaucuuCAAuuacaugucccaauUGGCc -3'
miRNA:   3'- -CgGCGGCGAGGGCU--AGGCG---------GUU--------------ACCG- -5'
21242 5' -59.9 NC_004778.3 + 58181 0.67 0.642197
Target:  5'- cGCCGCCGCcgugUCCGAaugcaaagugugcUUCGCCAacgaaaaaucgGUGuGCu -3'
miRNA:   3'- -CGGCGGCGa---GGGCU-------------AGGCGGU-----------UAC-CG- -5'
21242 5' -59.9 NC_004778.3 + 57478 0.72 0.389968
Target:  5'- aGCUGCCGCUgCCGcgCgacggaaaaGCCGAcaUGGCg -3'
miRNA:   3'- -CGGCGGCGAgGGCuaGg--------CGGUU--ACCG- -5'
21242 5' -59.9 NC_004778.3 + 57291 0.66 0.69297
Target:  5'- uGUCGagcaCGuCUCCCGuUCCGUCGG-GGCc -3'
miRNA:   3'- -CGGCg---GC-GAGGGCuAGGCGGUUaCCG- -5'
21242 5' -59.9 NC_004778.3 + 53101 0.66 0.741521
Target:  5'- cGCCGCCGCagcaaCCG--CCGCCAca-GCa -3'
miRNA:   3'- -CGGCGGCGag---GGCuaGGCGGUuacCG- -5'
21242 5' -59.9 NC_004778.3 + 50760 0.7 0.50542
Target:  5'- aUCGuuGCUaaggccCUCGAUCaUGCCGAUGGCc -3'
miRNA:   3'- cGGCggCGA------GGGCUAG-GCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 46380 0.66 0.702811
Target:  5'- aGgCGCCGUUCgCgCGAcuugcUCUGCCAcucuuUGGCg -3'
miRNA:   3'- -CgGCGGCGAG-G-GCU-----AGGCGGUu----ACCG- -5'
21242 5' -59.9 NC_004778.3 + 45222 0.67 0.663187
Target:  5'- -aCGCCGCUCgCG---CGCUGAUGGUa -3'
miRNA:   3'- cgGCGGCGAGgGCuagGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 35943 0.69 0.563486
Target:  5'- aGCCGCCGaa-CUGAcUCGCUAcUGGCu -3'
miRNA:   3'- -CGGCGGCgagGGCUaGGCGGUuACCG- -5'
21242 5' -59.9 NC_004778.3 + 35824 0.66 0.712595
Target:  5'- cGgCGCCGCaCCaacaaGcgCCuuggggGCCAGUGGCg -3'
miRNA:   3'- -CgGCGGCGaGGg----CuaGG------CGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 33223 0.66 0.731959
Target:  5'- gGCCGCUGCa-CCGuUgCGCCA--GGCu -3'
miRNA:   3'- -CGGCGGCGagGGCuAgGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 32979 0.71 0.450074
Target:  5'- gGCCaGCCGCgUCCGAaacugguuuucgUCCGC-AAUGGCc -3'
miRNA:   3'- -CGG-CGGCGaGGGCU------------AGGCGgUUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.