miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21242 5' -59.9 NC_004778.3 + 97417 0.66 0.722314
Target:  5'- aGCCGCCGgUUCUaAUCUGCagcgagugcaAAUGGUg -3'
miRNA:   3'- -CGGCGGCgAGGGcUAGGCGg---------UUACCG- -5'
21242 5' -59.9 NC_004778.3 + 108417 0.67 0.633188
Target:  5'- uGCCGCgGCgcagguggacgCgCUGGUgCGCCGcgGGCu -3'
miRNA:   3'- -CGGCGgCGa----------G-GGCUAgGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 58181 0.67 0.642197
Target:  5'- cGCCGCCGCcgugUCCGAaugcaaagugugcUUCGCCAacgaaaaaucgGUGuGCu -3'
miRNA:   3'- -CGGCGGCGa---GGGCU-------------AGGCGGU-----------UAC-CG- -5'
21242 5' -59.9 NC_004778.3 + 118973 0.67 0.647201
Target:  5'- gGgCGCCGUUCCCGcgcccgauuuaaAUaaauaaacgauaacgCCGUUAGUGGCg -3'
miRNA:   3'- -CgGCGGCGAGGGC------------UA---------------GGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 70566 0.67 0.660193
Target:  5'- gGCCGCaguucggcgagcuaCGUUUCCagcaauuuuucGAUCCGCCGuUGGUg -3'
miRNA:   3'- -CGGCG--------------GCGAGGG-----------CUAGGCGGUuACCG- -5'
21242 5' -59.9 NC_004778.3 + 12741 0.67 0.68308
Target:  5'- -gUGCCGCg-CCGAuUCCGCUGucgGGCg -3'
miRNA:   3'- cgGCGGCGagGGCU-AGGCGGUua-CCG- -5'
21242 5' -59.9 NC_004778.3 + 11996 0.66 0.702811
Target:  5'- gGCagGCCGCUgCCGcgCCGCCGc---- -3'
miRNA:   3'- -CGg-CGGCGAgGGCuaGGCGGUuaccg -5'
21242 5' -59.9 NC_004778.3 + 46380 0.66 0.702811
Target:  5'- aGgCGCCGUUCgCgCGAcuugcUCUGCCAcucuuUGGCg -3'
miRNA:   3'- -CgGCGGCGAG-G-GCU-----AGGCGGUu----ACCG- -5'
21242 5' -59.9 NC_004778.3 + 35824 0.66 0.712595
Target:  5'- cGgCGCCGCaCCaacaaGcgCCuuggggGCCAGUGGCg -3'
miRNA:   3'- -CgGCGGCGaGGg----CuaGG------CGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 85355 0.68 0.604178
Target:  5'- cGCCGCCGCaaacgCCCGcguccaugacaucgCCGCCGcaaacgcccgcGUGGg -3'
miRNA:   3'- -CGGCGGCGa----GGGCua------------GGCGGU-----------UACCg -5'
21242 5' -59.9 NC_004778.3 + 85295 0.68 0.60318
Target:  5'- cGCCGCCGCaaacgCCCGcGUCCauGCCGuc-GCc -3'
miRNA:   3'- -CGGCGGCGa----GGGC-UAGG--CGGUuacCG- -5'
21242 5' -59.9 NC_004778.3 + 82751 0.68 0.60318
Target:  5'- cCCGCCGCgaaUUCCGA--CGCCGAagcGGCg -3'
miRNA:   3'- cGGCGGCG---AGGGCUagGCGGUUa--CCG- -5'
21242 5' -59.9 NC_004778.3 + 10736 0.72 0.365865
Target:  5'- cGCUGCgCGCUCCgCGggCUGCCGuGUGcGCg -3'
miRNA:   3'- -CGGCG-GCGAGG-GCuaGGCGGU-UAC-CG- -5'
21242 5' -59.9 NC_004778.3 + 57478 0.72 0.389968
Target:  5'- aGCUGCCGCUgCCGcgCgacggaaaaGCCGAcaUGGCg -3'
miRNA:   3'- -CGGCGGCGAgGGCuaGg--------CGGUU--ACCG- -5'
21242 5' -59.9 NC_004778.3 + 114295 0.71 0.432374
Target:  5'- cGCUGCCGCgaCCGAUgCGUuugaUAAUGGCc -3'
miRNA:   3'- -CGGCGGCGagGGCUAgGCG----GUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 64154 0.7 0.493166
Target:  5'- aGCgCGUCGCgCCCGuggCCGCCGagcuugacgcguucGUGGUg -3'
miRNA:   3'- -CG-GCGGCGaGGGCua-GGCGGU--------------UACCG- -5'
21242 5' -59.9 NC_004778.3 + 50760 0.7 0.50542
Target:  5'- aUCGuuGCUaaggccCUCGAUCaUGCCGAUGGCc -3'
miRNA:   3'- cGGCggCGA------GGGCUAG-GCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 207 0.69 0.563486
Target:  5'- aGCCGCCGC-CUUuuUUCGCCA--GGCu -3'
miRNA:   3'- -CGGCGGCGaGGGcuAGGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 35943 0.69 0.563486
Target:  5'- aGCCGCCGaa-CUGAcUCGCUAcUGGCu -3'
miRNA:   3'- -CGGCGGCgagGGCUaGGCGGUuACCG- -5'
21242 5' -59.9 NC_004778.3 + 111956 0.68 0.583266
Target:  5'- aGCCGCCGUUCaugaGAUCgCGgCCAAagcgucGGCa -3'
miRNA:   3'- -CGGCGGCGAGgg--CUAG-GC-GGUUa-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.