miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21242 5' -59.9 NC_004778.3 + 35943 0.69 0.563486
Target:  5'- aGCCGCCGaa-CUGAcUCGCUAcUGGCu -3'
miRNA:   3'- -CGGCGGCgagGGCUaGGCGGUuACCG- -5'
21242 5' -59.9 NC_004778.3 + 111956 0.68 0.583266
Target:  5'- aGCCGCCGUUCaugaGAUCgCGgCCAAagcgucGGCa -3'
miRNA:   3'- -CGGCGGCGAGgg--CUAG-GC-GGUUa-----CCG- -5'
21242 5' -59.9 NC_004778.3 + 82751 0.68 0.60318
Target:  5'- cCCGCCGCgaaUUCCGA--CGCCGAagcGGCg -3'
miRNA:   3'- cGGCGGCG---AGGGCUagGCGGUUa--CCG- -5'
21242 5' -59.9 NC_004778.3 + 5221 0.67 0.653201
Target:  5'- uGUCGCCGCgguuauaCCacgCCGCCAGUcgcgcGGCg -3'
miRNA:   3'- -CGGCGGCGag-----GGcuaGGCGGUUA-----CCG- -5'
21242 5' -59.9 NC_004778.3 + 110238 0.68 0.60318
Target:  5'- cGCCGUuuugaacaaaCGCgugCCCGGaaaccuggUCCGCC--UGGCg -3'
miRNA:   3'- -CGGCG----------GCGa--GGGCU--------AGGCGGuuACCG- -5'
21242 5' -59.9 NC_004778.3 + 95918 0.68 0.60318
Target:  5'- cGCUGCCGCgcggauagcgCCCGGcgCgGCUccaaaucuuGAUGGCg -3'
miRNA:   3'- -CGGCGGCGa---------GGGCUa-GgCGG---------UUACCG- -5'
21242 5' -59.9 NC_004778.3 + 81961 0.68 0.593209
Target:  5'- cGCCGCCGCaggagUUCUGGUuacagacgCCGCCcc-GGCa -3'
miRNA:   3'- -CGGCGGCG-----AGGGCUA--------GGCGGuuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 83422 0.68 0.593209
Target:  5'- aGCCGCCGCg-CCGuUCCGCgCGucuGCa -3'
miRNA:   3'- -CGGCGGCGagGGCuAGGCG-GUuacCG- -5'
21242 5' -59.9 NC_004778.3 + 121395 0.69 0.543889
Target:  5'- cCCGCCGCagacCCCGAcUCGCCGcaguuuGUGGa -3'
miRNA:   3'- cGGCGGCGa---GGGCUaGGCGGU------UACCg -5'
21242 5' -59.9 NC_004778.3 + 90295 0.69 0.514934
Target:  5'- cGCUGCaCGCUCCaGAauaCCGCacguAUGGCg -3'
miRNA:   3'- -CGGCG-GCGAGGgCUa--GGCGgu--UACCG- -5'
21242 5' -59.9 NC_004778.3 + 45222 0.67 0.663187
Target:  5'- -aCGCCGCUCgCG---CGCUGAUGGUa -3'
miRNA:   3'- cgGCGGCGAGgGCuagGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 32222 0.67 0.673149
Target:  5'- cGCCGCacguGCUCCUGAUuuGCguaGAUGa- -3'
miRNA:   3'- -CGGCGg---CGAGGGCUAggCGg--UUACcg -5'
21242 5' -59.9 NC_004778.3 + 70066 0.67 0.68308
Target:  5'- uGCCGCgGUagauucauaCCGGUCCGCUg--GGCc -3'
miRNA:   3'- -CGGCGgCGag-------GGCUAGGCGGuuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 57291 0.66 0.69297
Target:  5'- uGUCGagcaCGuCUCCCGuUCCGUCGG-GGCc -3'
miRNA:   3'- -CGGCg---GC-GAGGGCuAGGCGGUUaCCG- -5'
21242 5' -59.9 NC_004778.3 + 118885 0.66 0.69297
Target:  5'- cGCCGCCGCg-CCGAg--GCCAAgcGCa -3'
miRNA:   3'- -CGGCGGCGagGGCUaggCGGUUacCG- -5'
21242 5' -59.9 NC_004778.3 + 97555 0.66 0.702811
Target:  5'- aCCgGCgGCUUCCuugcGcgCCGCCAcacgAUGGCg -3'
miRNA:   3'- cGG-CGgCGAGGG----CuaGGCGGU----UACCG- -5'
21242 5' -59.9 NC_004778.3 + 21667 0.66 0.712595
Target:  5'- uGCCGCUuaGgUUUCGG-CCGgCGGUGGCg -3'
miRNA:   3'- -CGGCGG--CgAGGGCUaGGCgGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 62179 0.66 0.719406
Target:  5'- uGgCGCCGCUCUCGGcgUCCGCagacaucuuCAAuuacaugucccaauUGGCc -3'
miRNA:   3'- -CgGCGGCGAGGGCU--AGGCG---------GUU--------------ACCG- -5'
21242 5' -59.9 NC_004778.3 + 33223 0.66 0.731959
Target:  5'- gGCCGCUGCa-CCGuUgCGCCA--GGCu -3'
miRNA:   3'- -CGGCGGCGagGGCuAgGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 81997 1.14 0.000548
Target:  5'- cGCCGCCGCUCCCGAUCCGCCAAUGGCg -3'
miRNA:   3'- -CGGCGGCGAGGGCUAGGCGGUUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.