miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21242 5' -59.9 NC_004778.3 + 95400 0.7 0.48105
Target:  5'- cGCCGCgGCgcaccaugCCCGAgUCCGCggcgauuugguugaaCAcgGGCa -3'
miRNA:   3'- -CGGCGgCGa-------GGGCU-AGGCG---------------GUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 63653 0.76 0.221425
Target:  5'- cGCCGCCGCagcaugagCCCGaAUCCGCCcgcgccgaaGAaGGCg -3'
miRNA:   3'- -CGGCGGCGa-------GGGC-UAGGCGG---------UUaCCG- -5'
21242 5' -59.9 NC_004778.3 + 95918 0.68 0.60318
Target:  5'- cGCUGCCGCgcggauagcgCCCGGcgCgGCUccaaaucuuGAUGGCg -3'
miRNA:   3'- -CGGCGGCGa---------GGGCUa-GgCGG---------UUACCG- -5'
21242 5' -59.9 NC_004778.3 + 19271 0.7 0.468166
Target:  5'- cGCCGCuCGCgcgCCCGAaccagcUuuGCCAAUuGGg -3'
miRNA:   3'- -CGGCG-GCGa--GGGCU------AggCGGUUA-CCg -5'
21242 5' -59.9 NC_004778.3 + 1128 0.72 0.389968
Target:  5'- gGCCGCUGCUgCgCCGAUCgaCGCCGAcgacggucaaUGGUc -3'
miRNA:   3'- -CGGCGGCGA-G-GGCUAG--GCGGUU----------ACCG- -5'
21242 5' -59.9 NC_004778.3 + 81997 1.14 0.000548
Target:  5'- cGCCGCCGCUCCCGAUCCGCCAAUGGCg -3'
miRNA:   3'- -CGGCGGCGAGGGCUAGGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 21295 0.7 0.495981
Target:  5'- -aCGgCGCUCCCGAcgCCGCagagcGGCa -3'
miRNA:   3'- cgGCgGCGAGGGCUa-GGCGguua-CCG- -5'
21242 5' -59.9 NC_004778.3 + 32979 0.71 0.450074
Target:  5'- gGCCaGCCGCgUCCGAaacugguuuucgUCCGC-AAUGGCc -3'
miRNA:   3'- -CGG-CGGCGaGGGCU------------AGGCGgUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 117178 0.7 0.459073
Target:  5'- cGUCGgUGUUCgUGGUCgUGCCGGUGGCg -3'
miRNA:   3'- -CGGCgGCGAGgGCUAG-GCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 108417 0.67 0.633188
Target:  5'- uGCCGCgGCgcagguggacgCgCUGGUgCGCCGcgGGCu -3'
miRNA:   3'- -CGGCGgCGa----------G-GGCUAgGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 35824 0.66 0.712595
Target:  5'- cGgCGCCGCaCCaacaaGcgCCuuggggGCCAGUGGCg -3'
miRNA:   3'- -CgGCGGCGaGGg----CuaGG------CGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 57478 0.72 0.389968
Target:  5'- aGCUGCCGCUgCCGcgCgacggaaaaGCCGAcaUGGCg -3'
miRNA:   3'- -CGGCGGCGAgGGCuaGg--------CGGUU--ACCG- -5'
21242 5' -59.9 NC_004778.3 + 95145 0.66 0.731959
Target:  5'- gGCCGUuUGUUCCaccacaCGA-CCGCCGAcGGCg -3'
miRNA:   3'- -CGGCG-GCGAGG------GCUaGGCGGUUaCCG- -5'
21242 5' -59.9 NC_004778.3 + 50760 0.7 0.50542
Target:  5'- aUCGuuGCUaaggccCUCGAUCaUGCCGAUGGCc -3'
miRNA:   3'- cGGCggCGA------GGGCUAG-GCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 53101 0.66 0.741521
Target:  5'- cGCCGCCGCagcaaCCG--CCGCCAca-GCa -3'
miRNA:   3'- -CGGCGGCGag---GGCuaGGCGGUuacCG- -5'
21242 5' -59.9 NC_004778.3 + 207 0.69 0.563486
Target:  5'- aGCCGCCGC-CUUuuUUCGCCA--GGCu -3'
miRNA:   3'- -CGGCGGCGaGGGcuAGGCGGUuaCCG- -5'
21242 5' -59.9 NC_004778.3 + 118973 0.67 0.647201
Target:  5'- gGgCGCCGUUCCCGcgcccgauuuaaAUaaauaaacgauaacgCCGUUAGUGGCg -3'
miRNA:   3'- -CgGCGGCGAGGGC------------UA---------------GGCGGUUACCG- -5'
21242 5' -59.9 NC_004778.3 + 97417 0.66 0.722314
Target:  5'- aGCCGCCGgUUCUaAUCUGCagcgagugcaAAUGGUg -3'
miRNA:   3'- -CGGCGGCgAGGGcUAGGCGg---------UUACCG- -5'
21242 5' -59.9 NC_004778.3 + 58181 0.67 0.642197
Target:  5'- cGCCGCCGCcgugUCCGAaugcaaagugugcUUCGCCAacgaaaaaucgGUGuGCu -3'
miRNA:   3'- -CGGCGGCGa---GGGCU-------------AGGCGGU-----------UAC-CG- -5'
21242 5' -59.9 NC_004778.3 + 85355 0.68 0.604178
Target:  5'- cGCCGCCGCaaacgCCCGcguccaugacaucgCCGCCGcaaacgcccgcGUGGg -3'
miRNA:   3'- -CGGCGGCGa----GGGCua------------GGCGGU-----------UACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.