Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21243 | 3' | -51.9 | NC_004778.3 | + | 82838 | 1.12 | 0.004023 |
Target: 5'- aCCGUCCAAACCGUGUUUGGCGGCUUGg -3' miRNA: 3'- -GGCAGGUUUGGCACAAACCGCCGAAC- -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 77570 | 0.68 | 0.934789 |
Target: 5'- gCUGUCCAuaauggugguuAUCGUGUUugUGGUGGCg-- -3' miRNA: 3'- -GGCAGGUu----------UGGCACAA--ACCGCCGaac -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 12743 | 0.68 | 0.934789 |
Target: 5'- gCCGcgCCGAuuCCGcUGUcgGGCGaGCUUGg -3' miRNA: 3'- -GGCa-GGUUu-GGC-ACAaaCCGC-CGAAC- -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 59211 | 0.68 | 0.944507 |
Target: 5'- aCCGUUUAAACUGUGgcUGGaGGCc-- -3' miRNA: 3'- -GGCAGGUUUGGCACaaACCgCCGaac -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 106324 | 0.68 | 0.957218 |
Target: 5'- aUGUCCAccauguacuuGACCGUGUUguugccgGGCGGa--- -3' miRNA: 3'- gGCAGGU----------UUGGCACAAa------CCGCCgaac -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 53114 | 0.68 | 0.957218 |
Target: 5'- aUGUCCAuacgggugauagGGCUGUGgcggaGGCGGCUg- -3' miRNA: 3'- gGCAGGU------------UUGGCACaaa--CCGCCGAac -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 95110 | 0.68 | 0.957218 |
Target: 5'- gCGUCuCGGACCGUGcgcGGcCGGCa-- -3' miRNA: 3'- gGCAG-GUUUGGCACaaaCC-GCCGaac -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 39763 | 0.67 | 0.964489 |
Target: 5'- cCCG-CCGGACUGUccgUGGCGGUc-- -3' miRNA: 3'- -GGCaGGUUUGGCAcaaACCGCCGaac -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 66096 | 0.67 | 0.96778 |
Target: 5'- gCUG-CCGAuCCGUGUUUGaCGGCg-- -3' miRNA: 3'- -GGCaGGUUuGGCACAAACcGCCGaac -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 57123 | 0.67 | 0.9737 |
Target: 5'- -gGUCCAGcGCCGUGUUcacgccGCGGCa-- -3' miRNA: 3'- ggCAGGUU-UGGCACAAac----CGCCGaac -5' |
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21243 | 3' | -51.9 | NC_004778.3 | + | 75942 | 0.66 | 0.981042 |
Target: 5'- aCCGUauuugcCCGAgGCCGUGUUUGcGCacauGCUUGc -3' miRNA: 3'- -GGCA------GGUU-UGGCACAAAC-CGc---CGAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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