miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21244 3' -52.2 NC_004778.3 + 102296 0.66 0.973941
Target:  5'- gGCGauuGUC-GCGcaAACGCAGCCAAa- -3'
miRNA:   3'- -CGCg--CAGaCGUugUUGCGUCGGUUag -5'
21244 3' -52.2 NC_004778.3 + 10393 0.66 0.973941
Target:  5'- gGCGCG-CUGCGcacuaaACAccugcuCGCcGCCAAUUg -3'
miRNA:   3'- -CGCGCaGACGU------UGUu-----GCGuCGGUUAG- -5'
21244 3' -52.2 NC_004778.3 + 82869 0.66 0.973941
Target:  5'- gGUGuCG-CUGCAcaugcguaGCAACuGCGGCCAAa- -3'
miRNA:   3'- -CGC-GCaGACGU--------UGUUG-CGUCGGUUag -5'
21244 3' -52.2 NC_004778.3 + 21257 0.66 0.973663
Target:  5'- cGCGCGgcaggUUG-AGCAgauggcccgugauGCGCAGCgAGUCg -3'
miRNA:   3'- -CGCGCa----GACgUUGU-------------UGCGUCGgUUAG- -5'
21244 3' -52.2 NC_004778.3 + 16597 0.66 0.971065
Target:  5'- -aGCGUCcacguagucguUGUAAUugaaacgguGGCGCGGCCAGUa -3'
miRNA:   3'- cgCGCAG-----------ACGUUG---------UUGCGUCGGUUAg -5'
21244 3' -52.2 NC_004778.3 + 81112 0.66 0.971065
Target:  5'- gGCGUGUUUGCGgcugcACGAUGCcuuuuacaaaGGCCAu-- -3'
miRNA:   3'- -CGCGCAGACGU-----UGUUGCG----------UCGGUuag -5'
21244 3' -52.2 NC_004778.3 + 43525 0.66 0.971065
Target:  5'- aCGCGUgCUGCGGCAACaccaCGGCgCGAa- -3'
miRNA:   3'- cGCGCA-GACGUUGUUGc---GUCG-GUUag -5'
21244 3' -52.2 NC_004778.3 + 49288 0.66 0.971065
Target:  5'- cCGCucuuGUC-GCcgAACAGCGCGGCgCGGUCa -3'
miRNA:   3'- cGCG----CAGaCG--UUGUUGCGUCG-GUUAG- -5'
21244 3' -52.2 NC_004778.3 + 90545 0.66 0.971065
Target:  5'- uGCaGCGUCggauagugGCAGCGcucgccgccgaGCGCAgcGCCGAUUu -3'
miRNA:   3'- -CG-CGCAGa-------CGUUGU-----------UGCGU--CGGUUAG- -5'
21244 3' -52.2 NC_004778.3 + 72582 0.66 0.971065
Target:  5'- aUGCGUCgUGCGACAaauugACGUAcuuuGCCGAgcUCa -3'
miRNA:   3'- cGCGCAG-ACGUUGU-----UGCGU----CGGUU--AG- -5'
21244 3' -52.2 NC_004778.3 + 28856 0.66 0.970766
Target:  5'- uGCaGCG-CUGCAGCgAGCGCuauuguuGGCCGGa- -3'
miRNA:   3'- -CG-CGCaGACGUUG-UUGCG-------UCGGUUag -5'
21244 3' -52.2 NC_004778.3 + 2434 0.66 0.97016
Target:  5'- uGCGCGUUaccuguggcccgagUGCGGC-ACGCcGCUggUUa -3'
miRNA:   3'- -CGCGCAG--------------ACGUUGuUGCGuCGGuuAG- -5'
21244 3' -52.2 NC_004778.3 + 99188 0.66 0.967969
Target:  5'- uGgGCGUgaGCGccGCGACGCGuuGCCGggCg -3'
miRNA:   3'- -CgCGCAgaCGU--UGUUGCGU--CGGUuaG- -5'
21244 3' -52.2 NC_004778.3 + 111731 0.66 0.967969
Target:  5'- cGCGcCGUCcGUGACuuugGCGCGcCCGGUCg -3'
miRNA:   3'- -CGC-GCAGaCGUUGu---UGCGUcGGUUAG- -5'
21244 3' -52.2 NC_004778.3 + 73416 0.66 0.967969
Target:  5'- gGCGCGUUggGCGAU--CGCAcGCCcuGGUCg -3'
miRNA:   3'- -CGCGCAGa-CGUUGuuGCGU-CGG--UUAG- -5'
21244 3' -52.2 NC_004778.3 + 126853 0.66 0.964645
Target:  5'- cGCGCGcCUGCAAguuGCGCAcGUUuuUCa -3'
miRNA:   3'- -CGCGCaGACGUUgu-UGCGU-CGGuuAG- -5'
21244 3' -52.2 NC_004778.3 + 99101 0.66 0.964645
Target:  5'- aCGCGUUUGCGACAuauUG-GGCCA-UCg -3'
miRNA:   3'- cGCGCAGACGUUGUu--GCgUCGGUuAG- -5'
21244 3' -52.2 NC_004778.3 + 91345 0.66 0.961086
Target:  5'- aCGCGUCUGUGGagacgcuguuCGACGaCAGCgCAAUg -3'
miRNA:   3'- cGCGCAGACGUU----------GUUGC-GUCG-GUUAg -5'
21244 3' -52.2 NC_004778.3 + 66105 0.66 0.961086
Target:  5'- cCGUGUUugacgGCGAUGACGUGGCC-GUCg -3'
miRNA:   3'- cGCGCAGa----CGUUGUUGCGUCGGuUAG- -5'
21244 3' -52.2 NC_004778.3 + 16170 0.66 0.961086
Target:  5'- uGCGCGUCgcgGaUAACAACGCcaAGCaAGUUc -3'
miRNA:   3'- -CGCGCAGa--C-GUUGUUGCG--UCGgUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.