miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21244 5' -53.9 NC_004778.3 + 77363 0.66 0.926517
Target:  5'- gUGGCgCGCCGCgcgcuGGUGcaaUGCGCAc -3'
miRNA:   3'- gACCG-GCGGCGacu--UUACa--ACGUGUu -5'
21244 5' -53.9 NC_004778.3 + 60197 0.66 0.926517
Target:  5'- -cGGCaCGCCGC-----UGUUGUACAGa -3'
miRNA:   3'- gaCCG-GCGGCGacuuuACAACGUGUU- -5'
21244 5' -53.9 NC_004778.3 + 121702 0.66 0.920788
Target:  5'- -cGGCCGgCGUgGgcGUGUUGCugGc -3'
miRNA:   3'- gaCCGGCgGCGaCuuUACAACGugUu -5'
21244 5' -53.9 NC_004778.3 + 112047 0.66 0.920788
Target:  5'- -gGGCCGCaCGUUGAAcgcggGCACGu -3'
miRNA:   3'- gaCCGGCG-GCGACUUuacaaCGUGUu -5'
21244 5' -53.9 NC_004778.3 + 7162 0.66 0.914796
Target:  5'- -cGGCgCGCCgagcacuagcucGUUGAGGUGgcGCACAu -3'
miRNA:   3'- gaCCG-GCGG------------CGACUUUACaaCGUGUu -5'
21244 5' -53.9 NC_004778.3 + 14351 0.66 0.908543
Target:  5'- gCUGGCguccCGCCaGCUGugucAUGUUGCugGu -3'
miRNA:   3'- -GACCG----GCGG-CGACuu--UACAACGugUu -5'
21244 5' -53.9 NC_004778.3 + 30898 0.66 0.895263
Target:  5'- -gGGCCGUCGCaaGAAGUGccggUGCugGu -3'
miRNA:   3'- gaCCGGCGGCGa-CUUUACa---ACGugUu -5'
21244 5' -53.9 NC_004778.3 + 83115 0.66 0.895263
Target:  5'- --aGCCGCCGCcaUGAgcgucaccGAUG-UGCACAAg -3'
miRNA:   3'- gacCGGCGGCG--ACU--------UUACaACGUGUU- -5'
21244 5' -53.9 NC_004778.3 + 68920 0.67 0.880972
Target:  5'- gUGGCCaCCGUUGAAGgcaccgaGUUGUAUAAc -3'
miRNA:   3'- gACCGGcGGCGACUUUa------CAACGUGUU- -5'
21244 5' -53.9 NC_004778.3 + 41371 0.67 0.876493
Target:  5'- --cGCCGCCGCacgaauugcagcuggUGuggGAGUGUUGCGCGu -3'
miRNA:   3'- gacCGGCGGCG---------------AC---UUUACAACGUGUu -5'
21244 5' -53.9 NC_004778.3 + 103776 0.68 0.841097
Target:  5'- gUGGacaCGCCGCaacgcaaGAAcgGUUGCACGu -3'
miRNA:   3'- gACCg--GCGGCGa------CUUuaCAACGUGUu -5'
21244 5' -53.9 NC_004778.3 + 64814 0.69 0.805402
Target:  5'- gUGGCCcgcGCCGUUGAaagcgcacgGAUGUgcaUGCACGc -3'
miRNA:   3'- gACCGG---CGGCGACU---------UUACA---ACGUGUu -5'
21244 5' -53.9 NC_004778.3 + 57547 0.69 0.796023
Target:  5'- --aGCCGCCaGCUGGcaaAGUGgcGCGCAAa -3'
miRNA:   3'- gacCGGCGG-CGACU---UUACaaCGUGUU- -5'
21244 5' -53.9 NC_004778.3 + 89859 0.78 0.301594
Target:  5'- -aGGCUGCCGCgGAGAUGUUGC-CGc -3'
miRNA:   3'- gaCCGGCGGCGaCUUUACAACGuGUu -5'
21244 5' -53.9 NC_004778.3 + 83370 1.06 0.004633
Target:  5'- gCUGGCCGCCGCUGAAAUGUUGCACAAc -3'
miRNA:   3'- -GACCGGCGGCGACUUUACAACGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.