miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21245 3' -55.2 NC_004778.3 + 104135 0.66 0.898384
Target:  5'- uGCAGCGUCUCUuugGGCGGC--GCGAu -3'
miRNA:   3'- -CGUUGUAGAGGcg-CCGUCGgaUGCUu -5'
21245 3' -55.2 NC_004778.3 + 119620 0.66 0.898384
Target:  5'- cCGAgAUUUgcaCCGUGGC-GCCUACGGAc -3'
miRNA:   3'- cGUUgUAGA---GGCGCCGuCGGAUGCUU- -5'
21245 3' -55.2 NC_004778.3 + 6172 0.66 0.891614
Target:  5'- uGCAGCcuUCUCCGUGGCGaCUUgucGCGGGu -3'
miRNA:   3'- -CGUUGu-AGAGGCGCCGUcGGA---UGCUU- -5'
21245 3' -55.2 NC_004778.3 + 988 0.66 0.884604
Target:  5'- cGCAGCAgcggCUCCaacgcGUGGCGGuCCgcCGAAa -3'
miRNA:   3'- -CGUUGUa---GAGG-----CGCCGUC-GGauGCUU- -5'
21245 3' -55.2 NC_004778.3 + 8049 0.66 0.882454
Target:  5'- uGCAccCAUCgCCGCgGGCugaucauaaacgcgAGCCUGCGAc -3'
miRNA:   3'- -CGUu-GUAGaGGCG-CCG--------------UCGGAUGCUu -5'
21245 3' -55.2 NC_004778.3 + 18393 0.66 0.877357
Target:  5'- aGCGGCGgaaCUCCGUGGCAcCCaACGu- -3'
miRNA:   3'- -CGUUGUa--GAGGCGCCGUcGGaUGCuu -5'
21245 3' -55.2 NC_004778.3 + 114414 0.66 0.875138
Target:  5'- aCGACAUCUCCGC--CAGCCUugugccgcccgaauACGGu -3'
miRNA:   3'- cGUUGUAGAGGCGccGUCGGA--------------UGCUu -5'
21245 3' -55.2 NC_004778.3 + 81800 0.66 0.874393
Target:  5'- gGCGGCGUCUguaaccagaacucCUGCGGCGGCgUcuuagccgccauugGCGGAu -3'
miRNA:   3'- -CGUUGUAGA-------------GGCGCCGUCGgA--------------UGCUU- -5'
21245 3' -55.2 NC_004778.3 + 43385 0.67 0.862175
Target:  5'- cGCAGCAcgcguacgUUuuGCGGCAgGCgUGCGAGc -3'
miRNA:   3'- -CGUUGUa-------GAggCGCCGU-CGgAUGCUU- -5'
21245 3' -55.2 NC_004778.3 + 15602 0.67 0.854252
Target:  5'- gGCGugGUCg-CGCggaGGCGGCgCUGCGAGc -3'
miRNA:   3'- -CGUugUAGagGCG---CCGUCG-GAUGCUU- -5'
21245 3' -55.2 NC_004778.3 + 29327 0.67 0.854252
Target:  5'- aGCGACGaC-CCGUGGCAGCgUcacgcgcucGCGAAc -3'
miRNA:   3'- -CGUUGUaGaGGCGCCGUCGgA---------UGCUU- -5'
21245 3' -55.2 NC_004778.3 + 81719 0.67 0.854252
Target:  5'- -uGACcgCUUaguaGCGGC-GCCUGCGAu -3'
miRNA:   3'- cgUUGuaGAGg---CGCCGuCGGAUGCUu -5'
21245 3' -55.2 NC_004778.3 + 53221 0.67 0.837775
Target:  5'- nGCGGCGguugCUGCGGCGGCgguugCUGCGGc -3'
miRNA:   3'- -CGUUGUaga-GGCGCCGUCG-----GAUGCUu -5'
21245 3' -55.2 NC_004778.3 + 53251 0.67 0.837775
Target:  5'- gGCGGCGguugCUGCGGCGGCgguugCUGCGGc -3'
miRNA:   3'- -CGUUGUaga-GGCGCCGUCG-----GAUGCUu -5'
21245 3' -55.2 NC_004778.3 + 21087 0.67 0.837775
Target:  5'- -aGGCGUCagCGCGGUgcAGCCcGCGGAg -3'
miRNA:   3'- cgUUGUAGagGCGCCG--UCGGaUGCUU- -5'
21245 3' -55.2 NC_004778.3 + 32578 0.67 0.829235
Target:  5'- cGUAACGUgCUCCaCGGCGGUCaggcacgcgaUGCGAAa -3'
miRNA:   3'- -CGUUGUA-GAGGcGCCGUCGG----------AUGCUU- -5'
21245 3' -55.2 NC_004778.3 + 95353 0.68 0.802515
Target:  5'- gGCAGCAgC-CCGuCGGCAGCCggGCa-- -3'
miRNA:   3'- -CGUUGUaGaGGC-GCCGUCGGa-UGcuu -5'
21245 3' -55.2 NC_004778.3 + 77912 0.68 0.79327
Target:  5'- aCAGCGUgcacaUCCGuCGGCAGCCUaACGc- -3'
miRNA:   3'- cGUUGUAg----AGGC-GCCGUCGGA-UGCuu -5'
21245 3' -55.2 NC_004778.3 + 53146 0.69 0.744932
Target:  5'- gGCGGCGg--UUGCGGCggGGCCUGCGGc -3'
miRNA:   3'- -CGUUGUagaGGCGCCG--UCGGAUGCUu -5'
21245 3' -55.2 NC_004778.3 + 82965 0.69 0.724796
Target:  5'- gGUGACG-CUCaugGCGGCGGCUUAUGAu -3'
miRNA:   3'- -CGUUGUaGAGg--CGCCGUCGGAUGCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.