miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21247 5' -50.4 NC_004778.3 + 52395 0.66 0.991693
Target:  5'- gAGGGU--ACGUAUAUgcguuuUCGCCGCg -3'
miRNA:   3'- aUUCCAacUGCAUGUAau----GGCGGCGa -5'
21247 5' -50.4 NC_004778.3 + 116118 0.66 0.990964
Target:  5'- gUGAGGaaauggcggcgcacuUUGugGgacacaACAUucUACCGCCGCa -3'
miRNA:   3'- -AUUCC---------------AACugCa-----UGUA--AUGGCGGCGa -5'
21247 5' -50.4 NC_004778.3 + 99534 0.66 0.99032
Target:  5'- cAAGGUUaucuuuaGACGUGCGUcGgCGCCGa- -3'
miRNA:   3'- aUUCCAA-------CUGCAUGUAaUgGCGGCga -5'
21247 5' -50.4 NC_004778.3 + 115409 0.66 0.987535
Target:  5'- -cAGGUcuUGcACGUACaAUUGCaaGCCGCUa -3'
miRNA:   3'- auUCCA--AC-UGCAUG-UAAUGg-CGGCGA- -5'
21247 5' -50.4 NC_004778.3 + 32752 0.66 0.987535
Target:  5'- cAAGGUUuuucgcaucGCGUGCcugACCGCCGUg -3'
miRNA:   3'- aUUCCAAc--------UGCAUGuaaUGGCGGCGa -5'
21247 5' -50.4 NC_004778.3 + 8035 0.66 0.987535
Target:  5'- aGGGGcUGcuaGCGUGCAcccAUCGCCGCg -3'
miRNA:   3'- aUUCCaAC---UGCAUGUaa-UGGCGGCGa -5'
21247 5' -50.4 NC_004778.3 + 45712 0.66 0.98584
Target:  5'- cAGGGUgucgggcagGugGUGCAUcGCUGCUGUc -3'
miRNA:   3'- aUUCCAa--------CugCAUGUAaUGGCGGCGa -5'
21247 5' -50.4 NC_004778.3 + 24667 0.67 0.983974
Target:  5'- --uGGUcaaugaUGACGcGCAcUUGCCGCaCGCUa -3'
miRNA:   3'- auuCCA------ACUGCaUGU-AAUGGCG-GCGA- -5'
21247 5' -50.4 NC_004778.3 + 70269 0.67 0.977255
Target:  5'- --uGGacGGCGUGCGcgGCCGCgGCa -3'
miRNA:   3'- auuCCaaCUGCAUGUaaUGGCGgCGa -5'
21247 5' -50.4 NC_004778.3 + 101052 0.68 0.965342
Target:  5'- uUGAGGgcGuCGUugAggccgucGCCGCCGCa -3'
miRNA:   3'- -AUUCCaaCuGCAugUaa-----UGGCGGCGa -5'
21247 5' -50.4 NC_004778.3 + 38148 0.69 0.949609
Target:  5'- cAAGGacgUUGACGUguGCAUgacugcugACgCGCCGCUa -3'
miRNA:   3'- aUUCC---AACUGCA--UGUAa-------UG-GCGGCGA- -5'
21247 5' -50.4 NC_004778.3 + 75492 0.7 0.924084
Target:  5'- --------cUGUACGUUGCCGCCGCUu -3'
miRNA:   3'- auuccaacuGCAUGUAAUGGCGGCGA- -5'
21247 5' -50.4 NC_004778.3 + 21197 0.71 0.898847
Target:  5'- --cGGcgGACGUGCA--GCCGuuGCUg -3'
miRNA:   3'- auuCCaaCUGCAUGUaaUGGCggCGA- -5'
21247 5' -50.4 NC_004778.3 + 15850 0.71 0.884656
Target:  5'- cAAGGgUGuuGUGCAUUGCaauGCCGCUu -3'
miRNA:   3'- aUUCCaACugCAUGUAAUGg--CGGCGA- -5'
21247 5' -50.4 NC_004778.3 + 94553 1.07 0.009433
Target:  5'- aUAAGGUUGACGUACAUUACCGCCGCUg -3'
miRNA:   3'- -AUUCCAACUGCAUGUAAUGGCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.