miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21249 5' -58 NC_004778.3 + 32270 0.66 0.809375
Target:  5'- cCGCGCAcGCUgGCCGGCgGCGccgUGuCGGg -3'
miRNA:   3'- -GCGCGU-UGGgUGGCCG-UGCa--AC-GUCa -5'
21249 5' -58 NC_004778.3 + 7550 0.66 0.809375
Target:  5'- gCGCGCGaauuuGCUUGCUGGC--GUUGCAGa -3'
miRNA:   3'- -GCGCGU-----UGGGUGGCCGugCAACGUCa -5'
21249 5' -58 NC_004778.3 + 29194 0.66 0.800503
Target:  5'- uCGCucgGCAGCCaAUCGcGCACGcgGCAGUc -3'
miRNA:   3'- -GCG---CGUUGGgUGGC-CGUGCaaCGUCA- -5'
21249 5' -58 NC_004778.3 + 80511 0.66 0.800503
Target:  5'- uCGCGCAGCUCGCUcaGGCuguCGUagauucGCGGg -3'
miRNA:   3'- -GCGCGUUGGGUGG--CCGu--GCAa-----CGUCa -5'
21249 5' -58 NC_004778.3 + 57421 0.66 0.79148
Target:  5'- uCGCGCAAgaUUAgCGGCGCGUUG-AGUc -3'
miRNA:   3'- -GCGCGUUg-GGUgGCCGUGCAACgUCA- -5'
21249 5' -58 NC_004778.3 + 14004 0.66 0.79148
Target:  5'- aGUGCu-UCCAUCGGCACGUaaUGCc-- -3'
miRNA:   3'- gCGCGuuGGGUGGCCGUGCA--ACGuca -5'
21249 5' -58 NC_004778.3 + 108036 0.66 0.782313
Target:  5'- gGCGCAGCCCAC--GUGCuUUGCGGc -3'
miRNA:   3'- gCGCGUUGGGUGgcCGUGcAACGUCa -5'
21249 5' -58 NC_004778.3 + 57034 0.66 0.782313
Target:  5'- gGCGCAGCCCGCUauguCGCGUguuCGGUg -3'
miRNA:   3'- gCGCGUUGGGUGGcc--GUGCAac-GUCA- -5'
21249 5' -58 NC_004778.3 + 83549 0.66 0.773011
Target:  5'- uCGCGCGugucguuguGCCCggccuccaaaagACCGcGCAUGUucUGCAGa -3'
miRNA:   3'- -GCGCGU---------UGGG------------UGGC-CGUGCA--ACGUCa -5'
21249 5' -58 NC_004778.3 + 87930 0.66 0.773011
Target:  5'- uGCGCAACagCCACUGuuUACGUUGUAGc -3'
miRNA:   3'- gCGCGUUG--GGUGGCc-GUGCAACGUCa -5'
21249 5' -58 NC_004778.3 + 17110 0.66 0.773011
Target:  5'- gCGCGCGgcgcGCCUACCguGGCAacgcCGUUGcCAGc -3'
miRNA:   3'- -GCGCGU----UGGGUGG--CCGU----GCAAC-GUCa -5'
21249 5' -58 NC_004778.3 + 85544 0.66 0.773011
Target:  5'- gGCGUcGCCCACgCGG-GCGUuUGCGGc -3'
miRNA:   3'- gCGCGuUGGGUG-GCCgUGCA-ACGUCa -5'
21249 5' -58 NC_004778.3 + 49027 0.66 0.763583
Target:  5'- aCGCGCGugCCGCCaaGGC-CGU-GCGc- -3'
miRNA:   3'- -GCGCGUugGGUGG--CCGuGCAaCGUca -5'
21249 5' -58 NC_004778.3 + 61314 0.66 0.763583
Target:  5'- gGCGCAuccauCUCGCCGGCcacuuuauACGccGCAGg -3'
miRNA:   3'- gCGCGUu----GGGUGGCCG--------UGCaaCGUCa -5'
21249 5' -58 NC_004778.3 + 112399 0.66 0.763583
Target:  5'- uCGCGCAGCUUAggCGGCACGUaGUAa- -3'
miRNA:   3'- -GCGCGUUGGGUg-GCCGUGCAaCGUca -5'
21249 5' -58 NC_004778.3 + 92985 0.66 0.763583
Target:  5'- uGUGCAACgacaaagucgCCGCCGGCcGCGUgaacgcGCAGc -3'
miRNA:   3'- gCGCGUUG----------GGUGGCCG-UGCAa-----CGUCa -5'
21249 5' -58 NC_004778.3 + 20537 0.67 0.754038
Target:  5'- uGCGCAgcaagaugcgGCCUuggcuaaaACCGaCGCGUUGCAGc -3'
miRNA:   3'- gCGCGU----------UGGG--------UGGCcGUGCAACGUCa -5'
21249 5' -58 NC_004778.3 + 47556 0.67 0.754038
Target:  5'- gCGCGUggUCCACgCGcGCGCG-UGCGa- -3'
miRNA:   3'- -GCGCGuuGGGUG-GC-CGUGCaACGUca -5'
21249 5' -58 NC_004778.3 + 43094 0.67 0.744386
Target:  5'- gCGCGCGGCCUuacuACCGGCGgcUGcUGCGc- -3'
miRNA:   3'- -GCGCGUUGGG----UGGCCGU--GCaACGUca -5'
21249 5' -58 NC_004778.3 + 118797 0.67 0.744386
Target:  5'- gCGCGCAcaauuacgagGCCCAgCGGCGCcguguauuuGUUGUAa- -3'
miRNA:   3'- -GCGCGU----------UGGGUgGCCGUG---------CAACGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.