Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21249 | 5' | -58 | NC_004778.3 | + | 7550 | 0.66 | 0.809375 |
Target: 5'- gCGCGCGaauuuGCUUGCUGGC--GUUGCAGa -3' miRNA: 3'- -GCGCGU-----UGGGUGGCCGugCAACGUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 32270 | 0.66 | 0.809375 |
Target: 5'- cCGCGCAcGCUgGCCGGCgGCGccgUGuCGGg -3' miRNA: 3'- -GCGCGU-UGGgUGGCCG-UGCa--AC-GUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 80511 | 0.66 | 0.800503 |
Target: 5'- uCGCGCAGCUCGCUcaGGCuguCGUagauucGCGGg -3' miRNA: 3'- -GCGCGUUGGGUGG--CCGu--GCAa-----CGUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 29194 | 0.66 | 0.800503 |
Target: 5'- uCGCucgGCAGCCaAUCGcGCACGcgGCAGUc -3' miRNA: 3'- -GCG---CGUUGGgUGGC-CGUGCaaCGUCA- -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 57421 | 0.66 | 0.79148 |
Target: 5'- uCGCGCAAgaUUAgCGGCGCGUUG-AGUc -3' miRNA: 3'- -GCGCGUUg-GGUgGCCGUGCAACgUCA- -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 14004 | 0.66 | 0.79148 |
Target: 5'- aGUGCu-UCCAUCGGCACGUaaUGCc-- -3' miRNA: 3'- gCGCGuuGGGUGGCCGUGCA--ACGuca -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 57034 | 0.66 | 0.782313 |
Target: 5'- gGCGCAGCCCGCUauguCGCGUguuCGGUg -3' miRNA: 3'- gCGCGUUGGGUGGcc--GUGCAac-GUCA- -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 108036 | 0.66 | 0.782313 |
Target: 5'- gGCGCAGCCCAC--GUGCuUUGCGGc -3' miRNA: 3'- gCGCGUUGGGUGgcCGUGcAACGUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 85544 | 0.66 | 0.773011 |
Target: 5'- gGCGUcGCCCACgCGG-GCGUuUGCGGc -3' miRNA: 3'- gCGCGuUGGGUG-GCCgUGCA-ACGUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 17110 | 0.66 | 0.773011 |
Target: 5'- gCGCGCGgcgcGCCUACCguGGCAacgcCGUUGcCAGc -3' miRNA: 3'- -GCGCGU----UGGGUGG--CCGU----GCAAC-GUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 87930 | 0.66 | 0.773011 |
Target: 5'- uGCGCAACagCCACUGuuUACGUUGUAGc -3' miRNA: 3'- gCGCGUUG--GGUGGCc-GUGCAACGUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 83549 | 0.66 | 0.773011 |
Target: 5'- uCGCGCGugucguuguGCCCggccuccaaaagACCGcGCAUGUucUGCAGa -3' miRNA: 3'- -GCGCGU---------UGGG------------UGGC-CGUGCA--ACGUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 92985 | 0.66 | 0.763583 |
Target: 5'- uGUGCAACgacaaagucgCCGCCGGCcGCGUgaacgcGCAGc -3' miRNA: 3'- gCGCGUUG----------GGUGGCCG-UGCAa-----CGUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 49027 | 0.66 | 0.763583 |
Target: 5'- aCGCGCGugCCGCCaaGGC-CGU-GCGc- -3' miRNA: 3'- -GCGCGUugGGUGG--CCGuGCAaCGUca -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 112399 | 0.66 | 0.763583 |
Target: 5'- uCGCGCAGCUUAggCGGCACGUaGUAa- -3' miRNA: 3'- -GCGCGUUGGGUg-GCCGUGCAaCGUca -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 61314 | 0.66 | 0.763583 |
Target: 5'- gGCGCAuccauCUCGCCGGCcacuuuauACGccGCAGg -3' miRNA: 3'- gCGCGUu----GGGUGGCCG--------UGCaaCGUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 20537 | 0.67 | 0.754038 |
Target: 5'- uGCGCAgcaagaugcgGCCUuggcuaaaACCGaCGCGUUGCAGc -3' miRNA: 3'- gCGCGU----------UGGG--------UGGCcGUGCAACGUCa -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 47556 | 0.67 | 0.754038 |
Target: 5'- gCGCGUggUCCACgCGcGCGCG-UGCGa- -3' miRNA: 3'- -GCGCGuuGGGUG-GC-CGUGCaACGUca -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 43094 | 0.67 | 0.744386 |
Target: 5'- gCGCGCGGCCUuacuACCGGCGgcUGcUGCGc- -3' miRNA: 3'- -GCGCGUUGGG----UGGCCGU--GCaACGUca -5' |
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21249 | 5' | -58 | NC_004778.3 | + | 118797 | 0.67 | 0.744386 |
Target: 5'- gCGCGCAcaauuacgagGCCCAgCGGCGCcguguauuuGUUGUAa- -3' miRNA: 3'- -GCGCGU----------UGGGUgGCCGUG---------CAACGUca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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