miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21249 5' -58 NC_004778.3 + 94989 1.07 0.002201
Target:  5'- gCGCGCAACCCACCGGCACGUUGCAGUc -3'
miRNA:   3'- -GCGCGUUGGGUGGCCGUGCAACGUCA- -5'
21249 5' -58 NC_004778.3 + 16464 0.74 0.328077
Target:  5'- uGCGCAguuaucacgccgacGCCUGCCGGCACGUUuacaaccgcgucGUAGUg -3'
miRNA:   3'- gCGCGU--------------UGGGUGGCCGUGCAA------------CGUCA- -5'
21249 5' -58 NC_004778.3 + 12649 0.74 0.345506
Target:  5'- gCGCGCAACaauaggcgCUACCGGCAUGggagGCGGg -3'
miRNA:   3'- -GCGCGUUG--------GGUGGCCGUGCaa--CGUCa -5'
21249 5' -58 NC_004778.3 + 95936 0.74 0.361193
Target:  5'- gGCGCAGCgCgGCCGGCGCGcUGCc-- -3'
miRNA:   3'- gCGCGUUG-GgUGGCCGUGCaACGuca -5'
21249 5' -58 NC_004778.3 + 25887 0.74 0.36439
Target:  5'- gGCGCGACCgugggCGCUGGCACGcucgucgcugggcgcUUGCAGg -3'
miRNA:   3'- gCGCGUUGG-----GUGGCCGUGC---------------AACGUCa -5'
21249 5' -58 NC_004778.3 + 32827 0.72 0.446749
Target:  5'- aCGCGCAGCugCCG-CGGCGCGUggugcguaaugUGCAGg -3'
miRNA:   3'- -GCGCGUUG--GGUgGCCGUGCA-----------ACGUCa -5'
21249 5' -58 NC_004778.3 + 121700 0.72 0.446749
Target:  5'- aCGUGCAgGCCCGCgucgGGCACGUUGuCGGc -3'
miRNA:   3'- -GCGCGU-UGGGUGg---CCGUGCAAC-GUCa -5'
21249 5' -58 NC_004778.3 + 81785 0.71 0.49354
Target:  5'- uGCGCGGCCUGCCGGgGCGgcgucUGUAa- -3'
miRNA:   3'- gCGCGUUGGGUGGCCgUGCa----ACGUca -5'
21249 5' -58 NC_004778.3 + 34277 0.71 0.507045
Target:  5'- gCGCGCAuauuugagcccGCCUacgagagcagcaaguGCCGGCGCGUgcuggaacuggUGCAGg -3'
miRNA:   3'- -GCGCGU-----------UGGG---------------UGGCCGUGCA-----------ACGUCa -5'
21249 5' -58 NC_004778.3 + 21247 0.71 0.512881
Target:  5'- cCGUGCAGUCCGCgCGGCAgGUUgaGCAGa -3'
miRNA:   3'- -GCGCGUUGGGUG-GCCGUgCAA--CGUCa -5'
21249 5' -58 NC_004778.3 + 125871 0.71 0.522668
Target:  5'- aCGCGCGGCauuUCGGCgugcacuucgGCGUUGCGGUa -3'
miRNA:   3'- -GCGCGUUGgguGGCCG----------UGCAACGUCA- -5'
21249 5' -58 NC_004778.3 + 81919 0.7 0.532526
Target:  5'- cCGCGCA-CCUACCGGCGCaGU--CGGUc -3'
miRNA:   3'- -GCGCGUuGGGUGGCCGUG-CAacGUCA- -5'
21249 5' -58 NC_004778.3 + 111969 0.7 0.54245
Target:  5'- gGCGCccucGCCCuuguuACCGGCGCGgcccgugGCAGa -3'
miRNA:   3'- gCGCGu---UGGG-----UGGCCGUGCaa-----CGUCa -5'
21249 5' -58 NC_004778.3 + 58016 0.7 0.552434
Target:  5'- aGCGCAugCCACUGcguGCACGUuucgGCAcGUg -3'
miRNA:   3'- gCGCGUugGGUGGC---CGUGCAa---CGU-CA- -5'
21249 5' -58 NC_004778.3 + 32745 0.7 0.57054
Target:  5'- gCGCGCGACacaCCGCCGGUaaaaauuGCGUagugaagUGCAGc -3'
miRNA:   3'- -GCGCGUUG---GGUGGCCG-------UGCA-------ACGUCa -5'
21249 5' -58 NC_004778.3 + 21099 0.7 0.582691
Target:  5'- gGUGCAGCCCGCgGaGCggACGUUGCccAGa -3'
miRNA:   3'- gCGCGUUGGGUGgC-CG--UGCAACG--UCa -5'
21249 5' -58 NC_004778.3 + 40515 0.69 0.60305
Target:  5'- gGCGCuuCgaCGCCGGCGCGUcGCAu- -3'
miRNA:   3'- gCGCGuuGg-GUGGCCGUGCAaCGUca -5'
21249 5' -58 NC_004778.3 + 52517 0.69 0.613266
Target:  5'- uGCGcCAGCCgGCCGGCcaacuGCGUguUGCAa- -3'
miRNA:   3'- gCGC-GUUGGgUGGCCG-----UGCA--ACGUca -5'
21249 5' -58 NC_004778.3 + 50005 0.69 0.623496
Target:  5'- aCGaUGCAGCCCGCaaGCGCGcccgUGCGGg -3'
miRNA:   3'- -GC-GCGUUGGGUGgcCGUGCa---ACGUCa -5'
21249 5' -58 NC_004778.3 + 73523 0.69 0.633732
Target:  5'- aCGCGCAAUUCGgCGGCGCa--GCAGc -3'
miRNA:   3'- -GCGCGUUGGGUgGCCGUGcaaCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.