miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21249 5' -58 NC_004778.3 + 118797 0.67 0.744386
Target:  5'- gCGCGCAcaauuacgagGCCCAgCGGCGCcguguauuuGUUGUAa- -3'
miRNA:   3'- -GCGCGU----------UGGGUgGCCGUG---------CAACGUca -5'
21249 5' -58 NC_004778.3 + 95778 0.68 0.654193
Target:  5'- cCGCGCGGCagcgCGCCGGCcGCGcUGCGc- -3'
miRNA:   3'- -GCGCGUUGg---GUGGCCG-UGCaACGUca -5'
21249 5' -58 NC_004778.3 + 37742 0.68 0.674584
Target:  5'- gGCGCAGCCCGCUuauuucaauguuGGCAauUUGCGcGUc -3'
miRNA:   3'- gCGCGUUGGGUGG------------CCGUgcAACGU-CA- -5'
21249 5' -58 NC_004778.3 + 37971 0.68 0.684731
Target:  5'- -uCGCAGCCgUAgCGGCGCGUcaGCAGUc -3'
miRNA:   3'- gcGCGUUGG-GUgGCCGUGCAa-CGUCA- -5'
21249 5' -58 NC_004778.3 + 114199 0.68 0.688778
Target:  5'- aCGCGUAuUCCaauuugugacugcaaGCCGGCACGUUGUc-- -3'
miRNA:   3'- -GCGCGUuGGG---------------UGGCCGUGCAACGuca -5'
21249 5' -58 NC_004778.3 + 52824 0.67 0.704886
Target:  5'- aGUGCugGACCCcgacgccauGCCGGCGCugauugUGCAGUu -3'
miRNA:   3'- gCGCG--UUGGG---------UGGCCGUGca----ACGUCA- -5'
21249 5' -58 NC_004778.3 + 21175 0.67 0.714876
Target:  5'- uGCGUAggguuaaaguGCUCGCCGGCggACG-UGCAGc -3'
miRNA:   3'- gCGCGU----------UGGGUGGCCG--UGCaACGUCa -5'
21249 5' -58 NC_004778.3 + 10252 0.67 0.714876
Target:  5'- uGCGCAGCgCGCCGauugcGCGCGggaccgGCGGc -3'
miRNA:   3'- gCGCGUUGgGUGGC-----CGUGCaa----CGUCa -5'
21249 5' -58 NC_004778.3 + 43094 0.67 0.744386
Target:  5'- gCGCGCGGCCUuacuACCGGCGgcUGcUGCGc- -3'
miRNA:   3'- -GCGCGUUGGG----UGGCCGU--GCaACGUca -5'
21249 5' -58 NC_004778.3 + 73523 0.69 0.633732
Target:  5'- aCGCGCAAUUCGgCGGCGCa--GCAGc -3'
miRNA:   3'- -GCGCGUUGGGUgGCCGUGcaaCGUCa -5'
21249 5' -58 NC_004778.3 + 52517 0.69 0.613266
Target:  5'- uGCGcCAGCCgGCCGGCcaacuGCGUguUGCAa- -3'
miRNA:   3'- gCGC-GUUGGgUGGCCG-----UGCA--ACGUca -5'
21249 5' -58 NC_004778.3 + 40515 0.69 0.60305
Target:  5'- gGCGCuuCgaCGCCGGCGCGUcGCAu- -3'
miRNA:   3'- gCGCGuuGg-GUGGCCGUGCAaCGUca -5'
21249 5' -58 NC_004778.3 + 25887 0.74 0.36439
Target:  5'- gGCGCGACCgugggCGCUGGCACGcucgucgcugggcgcUUGCAGg -3'
miRNA:   3'- gCGCGUUGG-----GUGGCCGUGC---------------AACGUCa -5'
21249 5' -58 NC_004778.3 + 121700 0.72 0.446749
Target:  5'- aCGUGCAgGCCCGCgucgGGCACGUUGuCGGc -3'
miRNA:   3'- -GCGCGU-UGGGUGg---CCGUGCAAC-GUCa -5'
21249 5' -58 NC_004778.3 + 81785 0.71 0.49354
Target:  5'- uGCGCGGCCUGCCGGgGCGgcgucUGUAa- -3'
miRNA:   3'- gCGCGUUGGGUGGCCgUGCa----ACGUca -5'
21249 5' -58 NC_004778.3 + 34277 0.71 0.507045
Target:  5'- gCGCGCAuauuugagcccGCCUacgagagcagcaaguGCCGGCGCGUgcuggaacuggUGCAGg -3'
miRNA:   3'- -GCGCGU-----------UGGG---------------UGGCCGUGCA-----------ACGUCa -5'
21249 5' -58 NC_004778.3 + 21247 0.71 0.512881
Target:  5'- cCGUGCAGUCCGCgCGGCAgGUUgaGCAGa -3'
miRNA:   3'- -GCGCGUUGGGUG-GCCGUgCAA--CGUCa -5'
21249 5' -58 NC_004778.3 + 58016 0.7 0.552434
Target:  5'- aGCGCAugCCACUGcguGCACGUuucgGCAcGUg -3'
miRNA:   3'- gCGCGUugGGUGGC---CGUGCAa---CGU-CA- -5'
21249 5' -58 NC_004778.3 + 32745 0.7 0.57054
Target:  5'- gCGCGCGACacaCCGCCGGUaaaaauuGCGUagugaagUGCAGc -3'
miRNA:   3'- -GCGCGUUG---GGUGGCCG-------UGCA-------ACGUCa -5'
21249 5' -58 NC_004778.3 + 21099 0.7 0.582691
Target:  5'- gGUGCAGCCCGCgGaGCggACGUUGCccAGa -3'
miRNA:   3'- gCGCGUUGGGUGgC-CG--UGCAACG--UCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.