miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21253 5' -51.7 NC_004778.3 + 10415 0.66 0.980656
Target:  5'- gCCGCCGgucccgcgcgCAAucGGCGCGCUGcG-CACUa -3'
miRNA:   3'- -GGUGGCa---------GUU--UCGUGUGAC-CaGUGAa -5'
21253 5' -51.7 NC_004778.3 + 75149 0.66 0.970134
Target:  5'- gCCGCCGgggcGGGCuCACUGGcCGCa- -3'
miRNA:   3'- -GGUGGCagu-UUCGuGUGACCaGUGaa -5'
21253 5' -51.7 NC_004778.3 + 14028 0.66 0.970134
Target:  5'- uUugUGUCGAAGCGCACUgaaGGUaguGCUUc -3'
miRNA:   3'- gGugGCAGUUUCGUGUGA---CCAg--UGAA- -5'
21253 5' -51.7 NC_004778.3 + 49607 0.67 0.966964
Target:  5'- -aGCCGUgcGAGCGCACUGcGggCGCUa -3'
miRNA:   3'- ggUGGCAguUUCGUGUGAC-Ca-GUGAa -5'
21253 5' -51.7 NC_004778.3 + 25890 0.67 0.959924
Target:  5'- gCgACCGUgGGcgcuGGCACGCUcGUCGCUg -3'
miRNA:   3'- -GgUGGCAgUU----UCGUGUGAcCAGUGAa -5'
21253 5' -51.7 NC_004778.3 + 38449 0.67 0.951913
Target:  5'- gCGCgGUCGcguGCGCGCUGG-CGCa- -3'
miRNA:   3'- gGUGgCAGUuu-CGUGUGACCaGUGaa -5'
21253 5' -51.7 NC_004778.3 + 102216 0.67 0.951913
Target:  5'- gCGCCG-CAcauGCcuugauucuuuACACUGGUCACUUu -3'
miRNA:   3'- gGUGGCaGUuu-CG-----------UGUGACCAGUGAA- -5'
21253 5' -51.7 NC_004778.3 + 111730 0.68 0.937996
Target:  5'- gCGCCGUCcgugacuuuGGCGCGCccGGUCGCc- -3'
miRNA:   3'- gGUGGCAGuu-------UCGUGUGa-CCAGUGaa -5'
21253 5' -51.7 NC_004778.3 + 26069 0.68 0.932838
Target:  5'- aCCGCCGUCGuGGC-CAC-GG-CGCUg -3'
miRNA:   3'- -GGUGGCAGUuUCGuGUGaCCaGUGAa -5'
21253 5' -51.7 NC_004778.3 + 101733 0.68 0.927419
Target:  5'- aCCGCCGcgguugCAAacgcguugccuGGCACACcGGUCAUUg -3'
miRNA:   3'- -GGUGGCa-----GUU-----------UCGUGUGaCCAGUGAa -5'
21253 5' -51.7 NC_004778.3 + 9149 0.69 0.921736
Target:  5'- cCCGCCGccCAAAuauuGCACGCUGGgaggCACc- -3'
miRNA:   3'- -GGUGGCa-GUUU----CGUGUGACCa---GUGaa -5'
21253 5' -51.7 NC_004778.3 + 121631 0.7 0.881465
Target:  5'- aCGCCGUCGgccGAGCGCACguUGGUUucggggaaguuuuGCUUa -3'
miRNA:   3'- gGUGGCAGU---UUCGUGUG--ACCAG-------------UGAA- -5'
21253 5' -51.7 NC_004778.3 + 110167 0.71 0.833956
Target:  5'- aCGCCGUC--GGCGCGCcgaaacaccgUGGUCACc- -3'
miRNA:   3'- gGUGGCAGuuUCGUGUG----------ACCAGUGaa -5'
21253 5' -51.7 NC_004778.3 + 101414 0.71 0.825164
Target:  5'- -aGCCGUCAAAGUugcggacacggACGgUGGUCAUUUg -3'
miRNA:   3'- ggUGGCAGUUUCG-----------UGUgACCAGUGAA- -5'
21253 5' -51.7 NC_004778.3 + 25611 0.71 0.816179
Target:  5'- -aACCGgCAAGGCGCACUGcGUUGCa- -3'
miRNA:   3'- ggUGGCaGUUUCGUGUGAC-CAGUGaa -5'
21253 5' -51.7 NC_004778.3 + 96704 1.08 0.006255
Target:  5'- cCCACCGUCAAAGCACACUGGUCACUUg -3'
miRNA:   3'- -GGUGGCAGUUUCGUGUGACCAGUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.