miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21254 5' -54.8 NC_004778.3 + 118587 0.66 0.923745
Target:  5'- aC-CCACGuccUGGUGGCGGgugCGGCAGu- -3'
miRNA:   3'- gGcGGUGU---GCUACCGCCa--GUCGUUua -5'
21254 5' -54.8 NC_004778.3 + 68614 0.66 0.923745
Target:  5'- aCGCCG-GCGgcGGCGG-CGGCGGc- -3'
miRNA:   3'- gGCGGUgUGCuaCCGCCaGUCGUUua -5'
21254 5' -54.8 NC_004778.3 + 110034 0.66 0.914487
Target:  5'- aUCGUuuguugCACACGugguaguugaagcaaGUGGUGGUCAGCGu-- -3'
miRNA:   3'- -GGCG------GUGUGC---------------UACCGCCAGUCGUuua -5'
21254 5' -54.8 NC_004778.3 + 83785 0.66 0.911463
Target:  5'- -gGUCAacaaACGGUGGCGGUCcuuuaccGGUAAAa -3'
miRNA:   3'- ggCGGUg---UGCUACCGCCAG-------UCGUUUa -5'
21254 5' -54.8 NC_004778.3 + 57629 0.66 0.899408
Target:  5'- uCCGUCGCGCGGcaGCGG-CAGCu--- -3'
miRNA:   3'- -GGCGGUGUGCUacCGCCaGUCGuuua -5'
21254 5' -54.8 NC_004778.3 + 82625 0.66 0.892711
Target:  5'- gCCGCCGCGCGAUaGC-GUC-GCAu-- -3'
miRNA:   3'- -GGCGGUGUGCUAcCGcCAGuCGUuua -5'
21254 5' -54.8 NC_004778.3 + 41370 0.67 0.885774
Target:  5'- gCCGCCGCACGAauUGcaGCuGGUguGgGAGUg -3'
miRNA:   3'- -GGCGGUGUGCU--AC--CG-CCAguCgUUUA- -5'
21254 5' -54.8 NC_004778.3 + 72641 0.67 0.878603
Target:  5'- aCGCCAC-CGAcGGCGGcacUUGGCAc-- -3'
miRNA:   3'- gGCGGUGuGCUaCCGCC---AGUCGUuua -5'
21254 5' -54.8 NC_004778.3 + 22411 0.67 0.863576
Target:  5'- gCGCCA-GCGGUacgGGCGcGUCGGCAu-- -3'
miRNA:   3'- gGCGGUgUGCUA---CCGC-CAGUCGUuua -5'
21254 5' -54.8 NC_004778.3 + 61022 0.67 0.863576
Target:  5'- uCCGgCGugcaGCGuUGGCGGUCGGUAGc- -3'
miRNA:   3'- -GGCgGUg---UGCuACCGCCAGUCGUUua -5'
21254 5' -54.8 NC_004778.3 + 26219 0.68 0.839415
Target:  5'- gCGCCGuggcCACGAcGGCGGU-GGCAAc- -3'
miRNA:   3'- gGCGGU----GUGCUaCCGCCAgUCGUUua -5'
21254 5' -54.8 NC_004778.3 + 116315 0.68 0.839415
Target:  5'- uUCGCguCGCGuUGGCGGggugCGGCGGu- -3'
miRNA:   3'- -GGCGguGUGCuACCGCCa---GUCGUUua -5'
21254 5' -54.8 NC_004778.3 + 107642 0.68 0.830957
Target:  5'- gCgGCCAUACGucGGCGGcguuagCGGCAAAUu -3'
miRNA:   3'- -GgCGGUGUGCuaCCGCCa-----GUCGUUUA- -5'
21254 5' -54.8 NC_004778.3 + 30827 0.68 0.830957
Target:  5'- aCCgGCCGCugGA-GGUGGUaGGCAu-- -3'
miRNA:   3'- -GG-CGGUGugCUaCCGCCAgUCGUuua -5'
21254 5' -54.8 NC_004778.3 + 97389 0.68 0.830957
Target:  5'- aCCGCCAU-CGuGUGGCGG-CGcGCAAGg -3'
miRNA:   3'- -GGCGGUGuGC-UACCGCCaGU-CGUUUa -5'
21254 5' -54.8 NC_004778.3 + 82687 0.69 0.795316
Target:  5'- gCCGCCaaACACGGuuUGGaCGGUCGucGCGGGc -3'
miRNA:   3'- -GGCGG--UGUGCU--ACC-GCCAGU--CGUUUa -5'
21254 5' -54.8 NC_004778.3 + 74086 0.69 0.795316
Target:  5'- -aGCCugACGAUGGCGcuuaacaGGCAAGa -3'
miRNA:   3'- ggCGGugUGCUACCGCcag----UCGUUUa -5'
21254 5' -54.8 NC_004778.3 + 47511 0.69 0.795316
Target:  5'- aCGCCGCACGcuGUGcaGCGG-CGGCAu-- -3'
miRNA:   3'- gGCGGUGUGC--UAC--CGCCaGUCGUuua -5'
21254 5' -54.8 NC_004778.3 + 35762 0.69 0.785998
Target:  5'- cCCGagCugGCGGacaacuugguUGGCGGUCuGCGAAUg -3'
miRNA:   3'- -GGCg-GugUGCU----------ACCGCCAGuCGUUUA- -5'
21254 5' -54.8 NC_004778.3 + 32419 0.69 0.785998
Target:  5'- gCCGCCGgccaGCG-UGcGCGGUUGGCAGGa -3'
miRNA:   3'- -GGCGGUg---UGCuAC-CGCCAGUCGUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.