Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21255 | 3' | -53.3 | NC_004778.3 | + | 18901 | 0.66 | 0.957443 |
Target: 5'- cUGCUGaucCACG-GGCACGCccucuuUGuCGGCa -3' miRNA: 3'- -ACGAUguuGUGCuUCGUGCG------AC-GCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 64796 | 0.66 | 0.957443 |
Target: 5'- aUGCUuguucGgGCGAcGCGCGCUGCGcCg -3' miRNA: 3'- -ACGAugu--UgUGCUuCGUGCGACGCcG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 25880 | 0.66 | 0.957443 |
Target: 5'- gUGUgcCGGCGCGAccgugggcgcuGGCACGCUcgucGCugGGCg -3' miRNA: 3'- -ACGauGUUGUGCU-----------UCGUGCGA----CG--CCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 82788 | 0.66 | 0.957443 |
Target: 5'- cGCUuugguCGACauGCGAcGCuauCGCgcgGCGGCu -3' miRNA: 3'- aCGAu----GUUG--UGCUuCGu--GCGa--CGCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 93012 | 0.66 | 0.957443 |
Target: 5'- cGUUcuCGGC-CGAAGCGUGCacgUGCGGCu -3' miRNA: 3'- aCGAu-GUUGuGCUUCGUGCG---ACGCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 7269 | 0.66 | 0.953448 |
Target: 5'- cGCUACAACAuCGAuugGCGCUGUcGUc -3' miRNA: 3'- aCGAUGUUGU-GCUucgUGCGACGcCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 114483 | 0.66 | 0.953448 |
Target: 5'- cGCU-CAACAaaaGcGAGCAgGCgcacGCGGCc -3' miRNA: 3'- aCGAuGUUGUg--C-UUCGUgCGa---CGCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 106618 | 0.66 | 0.953448 |
Target: 5'- aGUUGCGcguuuugcGCGCGcAGCGCGCUcaGCGcGUu -3' miRNA: 3'- aCGAUGU--------UGUGCuUCGUGCGA--CGC-CG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 80591 | 0.66 | 0.953448 |
Target: 5'- gGC-ACAuu-CGuuGCGCGCggUGCGGCu -3' miRNA: 3'- aCGaUGUuguGCuuCGUGCG--ACGCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 124437 | 0.66 | 0.953448 |
Target: 5'- cGCUuCAGCAuucuUGAAGCGCGCcgaGCuGCc -3' miRNA: 3'- aCGAuGUUGU----GCUUCGUGCGa--CGcCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 95994 | 0.66 | 0.953448 |
Target: 5'- gUGCUuACGGCGCGcaucGUguuGCGCUcGCGGUc -3' miRNA: 3'- -ACGA-UGUUGUGCuu--CG---UGCGA-CGCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 31405 | 0.66 | 0.953448 |
Target: 5'- aGUUucuCGGCGCGAGGUGCGC-GCGcCa -3' miRNA: 3'- aCGAu--GUUGUGCUUCGUGCGaCGCcG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 97286 | 0.66 | 0.953448 |
Target: 5'- cGCgauCAACAC----CGCGCUGaCGGCg -3' miRNA: 3'- aCGau-GUUGUGcuucGUGCGAC-GCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 98728 | 0.66 | 0.953448 |
Target: 5'- cGaCUACAACAuUGAAGUguauAUG-UGCGGCg -3' miRNA: 3'- aC-GAUGUUGU-GCUUCG----UGCgACGCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 43450 | 0.66 | 0.953448 |
Target: 5'- cGUUGCGACA---AGCGCGUUGaaGCg -3' miRNA: 3'- aCGAUGUUGUgcuUCGUGCGACgcCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 103783 | 0.66 | 0.953448 |
Target: 5'- cGCcGCAACGCaaGAAcgguuGCACG-UGUGGCg -3' miRNA: 3'- aCGaUGUUGUG--CUU-----CGUGCgACGCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 4554 | 0.66 | 0.953448 |
Target: 5'- ---cACGGCGCccAGCGCGCUGUGccGCg -3' miRNA: 3'- acgaUGUUGUGcuUCGUGCGACGC--CG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 128724 | 0.66 | 0.953035 |
Target: 5'- cGCUGCAGCAucaauCGAauugucgAGCAacg-GCGGCg -3' miRNA: 3'- aCGAUGUUGU-----GCU-------UCGUgcgaCGCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 68228 | 0.66 | 0.953035 |
Target: 5'- cGCcgGCA-CAUGggGCauucgacGCGCuuguuUGCGGCu -3' miRNA: 3'- aCGa-UGUuGUGCuuCG-------UGCG-----ACGCCG- -5' |
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21255 | 3' | -53.3 | NC_004778.3 | + | 77295 | 0.66 | 0.953035 |
Target: 5'- aGCgagugguuCGCGAagGGCACGCgcgcuuccgcuaucgGCGGCg -3' miRNA: 3'- aCGauguu---GUGCU--UCGUGCGa--------------CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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