miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21255 3' -53.3 NC_004778.3 + 64796 0.66 0.957443
Target:  5'- aUGCUuguucGgGCGAcGCGCGCUGCGcCg -3'
miRNA:   3'- -ACGAugu--UgUGCUuCGUGCGACGCcG- -5'
21255 3' -53.3 NC_004778.3 + 93012 0.66 0.957443
Target:  5'- cGUUcuCGGC-CGAAGCGUGCacgUGCGGCu -3'
miRNA:   3'- aCGAu-GUUGuGCUUCGUGCG---ACGCCG- -5'
21255 3' -53.3 NC_004778.3 + 82788 0.66 0.957443
Target:  5'- cGCUuugguCGACauGCGAcGCuauCGCgcgGCGGCu -3'
miRNA:   3'- aCGAu----GUUG--UGCUuCGu--GCGa--CGCCG- -5'
21255 3' -53.3 NC_004778.3 + 18901 0.66 0.957443
Target:  5'- cUGCUGaucCACG-GGCACGCccucuuUGuCGGCa -3'
miRNA:   3'- -ACGAUguuGUGCuUCGUGCG------AC-GCCG- -5'
21255 3' -53.3 NC_004778.3 + 25880 0.66 0.957443
Target:  5'- gUGUgcCGGCGCGAccgugggcgcuGGCACGCUcgucGCugGGCg -3'
miRNA:   3'- -ACGauGUUGUGCU-----------UCGUGCGA----CG--CCG- -5'
21255 3' -53.3 NC_004778.3 + 95994 0.66 0.953448
Target:  5'- gUGCUuACGGCGCGcaucGUguuGCGCUcGCGGUc -3'
miRNA:   3'- -ACGA-UGUUGUGCuu--CG---UGCGA-CGCCG- -5'
21255 3' -53.3 NC_004778.3 + 4554 0.66 0.953448
Target:  5'- ---cACGGCGCccAGCGCGCUGUGccGCg -3'
miRNA:   3'- acgaUGUUGUGcuUCGUGCGACGC--CG- -5'
21255 3' -53.3 NC_004778.3 + 124437 0.66 0.953448
Target:  5'- cGCUuCAGCAuucuUGAAGCGCGCcgaGCuGCc -3'
miRNA:   3'- aCGAuGUUGU----GCUUCGUGCGa--CGcCG- -5'
21255 3' -53.3 NC_004778.3 + 80591 0.66 0.953448
Target:  5'- gGC-ACAuu-CGuuGCGCGCggUGCGGCu -3'
miRNA:   3'- aCGaUGUuguGCuuCGUGCG--ACGCCG- -5'
21255 3' -53.3 NC_004778.3 + 106618 0.66 0.953448
Target:  5'- aGUUGCGcguuuugcGCGCGcAGCGCGCUcaGCGcGUu -3'
miRNA:   3'- aCGAUGU--------UGUGCuUCGUGCGA--CGC-CG- -5'
21255 3' -53.3 NC_004778.3 + 114483 0.66 0.953448
Target:  5'- cGCU-CAACAaaaGcGAGCAgGCgcacGCGGCc -3'
miRNA:   3'- aCGAuGUUGUg--C-UUCGUgCGa---CGCCG- -5'
21255 3' -53.3 NC_004778.3 + 31405 0.66 0.953448
Target:  5'- aGUUucuCGGCGCGAGGUGCGC-GCGcCa -3'
miRNA:   3'- aCGAu--GUUGUGCUUCGUGCGaCGCcG- -5'
21255 3' -53.3 NC_004778.3 + 97286 0.66 0.953448
Target:  5'- cGCgauCAACAC----CGCGCUGaCGGCg -3'
miRNA:   3'- aCGau-GUUGUGcuucGUGCGAC-GCCG- -5'
21255 3' -53.3 NC_004778.3 + 98728 0.66 0.953448
Target:  5'- cGaCUACAACAuUGAAGUguauAUG-UGCGGCg -3'
miRNA:   3'- aC-GAUGUUGU-GCUUCG----UGCgACGCCG- -5'
21255 3' -53.3 NC_004778.3 + 43450 0.66 0.953448
Target:  5'- cGUUGCGACA---AGCGCGUUGaaGCg -3'
miRNA:   3'- aCGAUGUUGUgcuUCGUGCGACgcCG- -5'
21255 3' -53.3 NC_004778.3 + 103783 0.66 0.953448
Target:  5'- cGCcGCAACGCaaGAAcgguuGCACG-UGUGGCg -3'
miRNA:   3'- aCGaUGUUGUG--CUU-----CGUGCgACGCCG- -5'
21255 3' -53.3 NC_004778.3 + 7269 0.66 0.953448
Target:  5'- cGCUACAACAuCGAuugGCGCUGUcGUc -3'
miRNA:   3'- aCGAUGUUGU-GCUucgUGCGACGcCG- -5'
21255 3' -53.3 NC_004778.3 + 128724 0.66 0.953035
Target:  5'- cGCUGCAGCAucaauCGAauugucgAGCAacg-GCGGCg -3'
miRNA:   3'- aCGAUGUUGU-----GCU-------UCGUgcgaCGCCG- -5'
21255 3' -53.3 NC_004778.3 + 68228 0.66 0.953035
Target:  5'- cGCcgGCA-CAUGggGCauucgacGCGCuuguuUGCGGCu -3'
miRNA:   3'- aCGa-UGUuGUGCuuCG-------UGCG-----ACGCCG- -5'
21255 3' -53.3 NC_004778.3 + 77295 0.66 0.953035
Target:  5'- aGCgagugguuCGCGAagGGCACGCgcgcuuccgcuaucgGCGGCg -3'
miRNA:   3'- aCGauguu---GUGCU--UCGUGCGa--------------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.