miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21255 5' -51.6 NC_004778.3 + 32943 0.66 0.985636
Target:  5'- -gGCCAgCGAcuccauGUUCGCGcagUCGCUGc -3'
miRNA:   3'- gaCGGUaGCUuu----CAAGCGC---AGCGACu -5'
21255 5' -51.6 NC_004778.3 + 121883 0.66 0.983788
Target:  5'- -gGCCGUUGcccAAGUUaCGCGU-GCUGGg -3'
miRNA:   3'- gaCGGUAGCu--UUCAA-GCGCAgCGACU- -5'
21255 5' -51.6 NC_004778.3 + 101036 0.67 0.961992
Target:  5'- aCUGCCGg-GAAuGGUUUugaggGCGUCGUUGAg -3'
miRNA:   3'- -GACGGUagCUU-UCAAG-----CGCAGCGACU- -5'
21255 5' -51.6 NC_004778.3 + 45240 0.69 0.925283
Target:  5'- -cGgCGUUGAAAGUccaggacgccgcUCGCG-CGCUGAu -3'
miRNA:   3'- gaCgGUAGCUUUCA------------AGCGCaGCGACU- -5'
21255 5' -51.6 NC_004778.3 + 7221 0.7 0.872271
Target:  5'- uUGCCGUUGGacgcgaagGAGgaCGUGUUGCUGGc -3'
miRNA:   3'- gACGGUAGCU--------UUCaaGCGCAGCGACU- -5'
21255 5' -51.6 NC_004778.3 + 6390 0.71 0.856598
Target:  5'- -cGCCGUCGuaaaa-CGCGUUGCUGGc -3'
miRNA:   3'- gaCGGUAGCuuucaaGCGCAGCGACU- -5'
21255 5' -51.6 NC_004778.3 + 107774 0.71 0.831459
Target:  5'- -cGCuCGUCGggGGcgUCGCGUUGCg-- -3'
miRNA:   3'- gaCG-GUAGCuuUCa-AGCGCAGCGacu -5'
21255 5' -51.6 NC_004778.3 + 29314 0.72 0.821787
Target:  5'- -gGCCAauaaucuUCGAAGGUggCGCGgcgcgCGCUGGg -3'
miRNA:   3'- gaCGGU-------AGCUUUCAa-GCGCa----GCGACU- -5'
21255 5' -51.6 NC_004778.3 + 45366 0.73 0.776133
Target:  5'- -cGCCgguGUCGAcGAGUUCGuCGUCGCUa- -3'
miRNA:   3'- gaCGG---UAGCU-UUCAAGC-GCAGCGAcu -5'
21255 5' -51.6 NC_004778.3 + 98955 0.75 0.61756
Target:  5'- uUGCCAUaCGcGGGGUcggaccgcguguugUCGCGUCGCUGGg -3'
miRNA:   3'- gACGGUA-GC-UUUCA--------------AGCGCAGCGACU- -5'
21255 5' -51.6 NC_004778.3 + 98854 1.09 0.00628
Target:  5'- gCUGCCAUCGAAAGUUCGCGUCGCUGAc -3'
miRNA:   3'- -GACGGUAGCUUUCAAGCGCAGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.