Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21255 | 5' | -51.6 | NC_004778.3 | + | 32943 | 0.66 | 0.985636 |
Target: 5'- -gGCCAgCGAcuccauGUUCGCGcagUCGCUGc -3' miRNA: 3'- gaCGGUaGCUuu----CAAGCGC---AGCGACu -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 121883 | 0.66 | 0.983788 |
Target: 5'- -gGCCGUUGcccAAGUUaCGCGU-GCUGGg -3' miRNA: 3'- gaCGGUAGCu--UUCAA-GCGCAgCGACU- -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 101036 | 0.67 | 0.961992 |
Target: 5'- aCUGCCGg-GAAuGGUUUugaggGCGUCGUUGAg -3' miRNA: 3'- -GACGGUagCUU-UCAAG-----CGCAGCGACU- -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 45240 | 0.69 | 0.925283 |
Target: 5'- -cGgCGUUGAAAGUccaggacgccgcUCGCG-CGCUGAu -3' miRNA: 3'- gaCgGUAGCUUUCA------------AGCGCaGCGACU- -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 7221 | 0.7 | 0.872271 |
Target: 5'- uUGCCGUUGGacgcgaagGAGgaCGUGUUGCUGGc -3' miRNA: 3'- gACGGUAGCU--------UUCaaGCGCAGCGACU- -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 6390 | 0.71 | 0.856598 |
Target: 5'- -cGCCGUCGuaaaa-CGCGUUGCUGGc -3' miRNA: 3'- gaCGGUAGCuuucaaGCGCAGCGACU- -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 107774 | 0.71 | 0.831459 |
Target: 5'- -cGCuCGUCGggGGcgUCGCGUUGCg-- -3' miRNA: 3'- gaCG-GUAGCuuUCa-AGCGCAGCGacu -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 29314 | 0.72 | 0.821787 |
Target: 5'- -gGCCAauaaucuUCGAAGGUggCGCGgcgcgCGCUGGg -3' miRNA: 3'- gaCGGU-------AGCUUUCAa-GCGCa----GCGACU- -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 45366 | 0.73 | 0.776133 |
Target: 5'- -cGCCgguGUCGAcGAGUUCGuCGUCGCUa- -3' miRNA: 3'- gaCGG---UAGCU-UUCAAGC-GCAGCGAcu -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 98955 | 0.75 | 0.61756 |
Target: 5'- uUGCCAUaCGcGGGGUcggaccgcguguugUCGCGUCGCUGGg -3' miRNA: 3'- gACGGUA-GC-UUUCA--------------AGCGCAGCGACU- -5' |
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21255 | 5' | -51.6 | NC_004778.3 | + | 98854 | 1.09 | 0.00628 |
Target: 5'- gCUGCCAUCGAAAGUUCGCGUCGCUGAc -3' miRNA: 3'- -GACGGUAGCUUUCAAGCGCAGCGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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