miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21256 5' -54.7 NC_004778.3 + 112389 0.65 0.933726
Target:  5'- cUCGCAaCCCGCGUgcuaucaccuggaCCGCGcGGcCGCu -3'
miRNA:   3'- cAGUGUcGGGCGCA-------------GGUGUuUCaGCG- -5'
21256 5' -54.7 NC_004778.3 + 8411 0.66 0.929037
Target:  5'- uUCGCGGUUugCGCGUCCGCugcGAGUaaCGUc -3'
miRNA:   3'- cAGUGUCGG--GCGCAGGUGu--UUCA--GCG- -5'
21256 5' -54.7 NC_004778.3 + 21275 0.66 0.929037
Target:  5'- --gAUGGCCCGUGaUgCGCAgcGAGUCGUu -3'
miRNA:   3'- cagUGUCGGGCGC-AgGUGU--UUCAGCG- -5'
21256 5' -54.7 NC_004778.3 + 121418 0.66 0.923592
Target:  5'- --aGCAGCaggcaCGCGUCgGCcguGUCGCc -3'
miRNA:   3'- cagUGUCGg----GCGCAGgUGuuuCAGCG- -5'
21256 5' -54.7 NC_004778.3 + 8678 0.66 0.923592
Target:  5'- uGUUuCGGCCCGCGaCCguaauACAAA-UCGCg -3'
miRNA:   3'- -CAGuGUCGGGCGCaGG-----UGUUUcAGCG- -5'
21256 5' -54.7 NC_004778.3 + 2242 0.66 0.923592
Target:  5'- cGUCAC-GCCCGCGgacguacgCCGCuucAGGUuuccggacCGCg -3'
miRNA:   3'- -CAGUGuCGGGCGCa-------GGUGu--UUCA--------GCG- -5'
21256 5' -54.7 NC_004778.3 + 31587 0.66 0.923592
Target:  5'- aUCGCA--CUGCGUCUAUAAAG-CGCu -3'
miRNA:   3'- cAGUGUcgGGCGCAGGUGUUUCaGCG- -5'
21256 5' -54.7 NC_004778.3 + 112352 0.66 0.923034
Target:  5'- uGUCGCAGCCuCGCcgacuaaaugccaGcuugaCCGCAAgcgcgcGGUCGCg -3'
miRNA:   3'- -CAGUGUCGG-GCG-------------Ca----GGUGUU------UCAGCG- -5'
21256 5' -54.7 NC_004778.3 + 49471 0.66 0.91673
Target:  5'- cGUUguGCGGCgCCGCGUCCAaugaccgCGCc -3'
miRNA:   3'- -CAG--UGUCG-GGCGCAGGUguuuca-GCG- -5'
21256 5' -54.7 NC_004778.3 + 62899 0.66 0.911958
Target:  5'- aGUCGCAGCaguaGCG-CCAU---GUCGCu -3'
miRNA:   3'- -CAGUGUCGgg--CGCaGGUGuuuCAGCG- -5'
21256 5' -54.7 NC_004778.3 + 44379 0.66 0.911958
Target:  5'- cGUCGC-GCCCG-GUCgCAUuuccGUCGCa -3'
miRNA:   3'- -CAGUGuCGGGCgCAG-GUGuuu-CAGCG- -5'
21256 5' -54.7 NC_004778.3 + 108058 0.66 0.911958
Target:  5'- aGUC-CAGCaCCGUuUCCGCAAcGG-CGCa -3'
miRNA:   3'- -CAGuGUCG-GGCGcAGGUGUU-UCaGCG- -5'
21256 5' -54.7 NC_004778.3 + 110192 0.66 0.91135
Target:  5'- uUCGCAGaCgGCG-CCACAagcugaagccuccGAGUCGUg -3'
miRNA:   3'- cAGUGUCgGgCGCaGGUGU-------------UUCAGCG- -5'
21256 5' -54.7 NC_004778.3 + 23076 0.66 0.905771
Target:  5'- uGUCGCga-CCGCGaUCCuuugGCAcGGUCGCg -3'
miRNA:   3'- -CAGUGucgGGCGC-AGG----UGUuUCAGCG- -5'
21256 5' -54.7 NC_004778.3 + 36423 0.67 0.899341
Target:  5'- cGUCA-GGCCCGCGUuguugaCCGCGuuGgCGCc -3'
miRNA:   3'- -CAGUgUCGGGCGCA------GGUGUuuCaGCG- -5'
21256 5' -54.7 NC_004778.3 + 15444 0.67 0.899341
Target:  5'- cUCGCAGCgCCGCcUCCGCGcgaccacgccaAAGUgcugcCGCg -3'
miRNA:   3'- cAGUGUCG-GGCGcAGGUGU-----------UUCA-----GCG- -5'
21256 5' -54.7 NC_004778.3 + 86579 0.67 0.899341
Target:  5'- aUCACAgGCCCGCGcUUAUuGAG-CGCg -3'
miRNA:   3'- cAGUGU-CGGGCGCaGGUGuUUCaGCG- -5'
21256 5' -54.7 NC_004778.3 + 114144 0.67 0.899341
Target:  5'- uUCAUGGCCuCGCGcUCAUu--GUCGCu -3'
miRNA:   3'- cAGUGUCGG-GCGCaGGUGuuuCAGCG- -5'
21256 5' -54.7 NC_004778.3 + 117883 0.67 0.899341
Target:  5'- -cCACga-CCGCGUCCACGucGaacUCGCg -3'
miRNA:   3'- caGUGucgGGCGCAGGUGUuuC---AGCG- -5'
21256 5' -54.7 NC_004778.3 + 95523 0.67 0.89267
Target:  5'- -cCAC-GUCCGCGUCCGCcAGcUCGUu -3'
miRNA:   3'- caGUGuCGGGCGCAGGUGuUUcAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.