miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21257 5' -51.3 NC_004778.3 + 100450 0.66 0.984645
Target:  5'- gGACA-GGCgu--GGCGGGCUaUGACGg -3'
miRNA:   3'- -CUGUaCCGauucCCGCUCGA-AUUGCg -5'
21257 5' -51.3 NC_004778.3 + 41229 0.66 0.984645
Target:  5'- cGugGUGGUguuGGGCaccgcGCUgGACGCg -3'
miRNA:   3'- -CugUACCGauuCCCGcu---CGAaUUGCG- -5'
21257 5' -51.3 NC_004778.3 + 8802 0.66 0.984456
Target:  5'- cGGCGaGGCggcGGGCGcGCUcagcgaaUGGCGCc -3'
miRNA:   3'- -CUGUaCCGauuCCCGCuCGA-------AUUGCG- -5'
21257 5' -51.3 NC_004778.3 + 71444 0.66 0.982676
Target:  5'- gGGCGUaGGC-GAGGGUGucGGCgggGGCGUa -3'
miRNA:   3'- -CUGUA-CCGaUUCCCGC--UCGaa-UUGCG- -5'
21257 5' -51.3 NC_004778.3 + 71396 0.66 0.982676
Target:  5'- gGGCGUaGGC-GAGGGUGucGGCgggGGCGUa -3'
miRNA:   3'- -CUGUA-CCGaUUCCCGC--UCGaa-UUGCG- -5'
21257 5' -51.3 NC_004778.3 + 71324 0.66 0.980523
Target:  5'- gGGCGUaGGC-GAGGGUGucGGCgggAGCGUa -3'
miRNA:   3'- -CUGUA-CCGaUUCCCGC--UCGaa-UUGCG- -5'
21257 5' -51.3 NC_004778.3 + 30437 0.66 0.980523
Target:  5'- cGCAUGGCguugauGGGCGuaaaCUU-GCGCa -3'
miRNA:   3'- cUGUACCGauu---CCCGCuc--GAAuUGCG- -5'
21257 5' -51.3 NC_004778.3 + 70561 0.66 0.978177
Target:  5'- cACAUGGCcgcaguucGGCGAGCU--ACGUu -3'
miRNA:   3'- cUGUACCGauuc----CCGCUCGAauUGCG- -5'
21257 5' -51.3 NC_004778.3 + 98140 0.66 0.978177
Target:  5'- -cCGUGGaaaAGGGGCGAucGCccGGCGCg -3'
miRNA:   3'- cuGUACCga-UUCCCGCU--CGaaUUGCG- -5'
21257 5' -51.3 NC_004778.3 + 47930 0.67 0.969889
Target:  5'- cGACAUGGUggacagcggcgcUAAGGGC-AGCgc--CGCu -3'
miRNA:   3'- -CUGUACCG------------AUUCCCGcUCGaauuGCG- -5'
21257 5' -51.3 NC_004778.3 + 64166 0.67 0.966683
Target:  5'- -cCGUGGCc---GcCGAGCUUGACGCg -3'
miRNA:   3'- cuGUACCGauucCcGCUCGAAUUGCG- -5'
21257 5' -51.3 NC_004778.3 + 12750 0.67 0.966683
Target:  5'- cGAUuccGCUGucGGGCGAGCUUggggacGAUGCg -3'
miRNA:   3'- -CUGuacCGAUu-CCCGCUCGAA------UUGCG- -5'
21257 5' -51.3 NC_004778.3 + 28022 0.68 0.955637
Target:  5'- cGCAUGGCgcucaacGGCG-GCgagGACGCg -3'
miRNA:   3'- cUGUACCGauuc---CCGCuCGaa-UUGCG- -5'
21257 5' -51.3 NC_004778.3 + 89888 0.68 0.95146
Target:  5'- aGCGUGGU---GGGCGcaagcGGCUUGcGCGCg -3'
miRNA:   3'- cUGUACCGauuCCCGC-----UCGAAU-UGCG- -5'
21257 5' -51.3 NC_004778.3 + 22706 0.68 0.947028
Target:  5'- aACGUGGU---GGGCGgAGCUUu-CGCa -3'
miRNA:   3'- cUGUACCGauuCCCGC-UCGAAuuGCG- -5'
21257 5' -51.3 NC_004778.3 + 75142 0.68 0.942337
Target:  5'- aACGuUGGCcgccGGGGCGGGCUcacUGGcCGCa -3'
miRNA:   3'- cUGU-ACCGau--UCCCGCUCGA---AUU-GCG- -5'
21257 5' -51.3 NC_004778.3 + 106454 0.68 0.942337
Target:  5'- gGGCuggGGCUGc-GGCGGGCacgGGCGCu -3'
miRNA:   3'- -CUGua-CCGAUucCCGCUCGaa-UUGCG- -5'
21257 5' -51.3 NC_004778.3 + 87698 0.69 0.914925
Target:  5'- aGCAUGGCgcgcGGCGAGCuUUAAgGUc -3'
miRNA:   3'- cUGUACCGauucCCGCUCG-AAUUgCG- -5'
21257 5' -51.3 NC_004778.3 + 3816 0.7 0.893227
Target:  5'- --aAUGGCUAcGcGGCGcuuguuuuuuacgaGGCUUAACGCc -3'
miRNA:   3'- cugUACCGAUuC-CCGC--------------UCGAAUUGCG- -5'
21257 5' -51.3 NC_004778.3 + 30700 0.7 0.873416
Target:  5'- cGGCuAUGGCgaacccguuGGGGCG-GCcuUUAACGCg -3'
miRNA:   3'- -CUG-UACCGau-------UCCCGCuCG--AAUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.